HsaINT1047659 @ hg38
Intron Retention
Gene
ENSG00000172687 | ZNF738
Description
zinc finger protein 738 [Source:HGNC Symbol;Acc:HGNC:32469]
Coordinates
chr19:21375869-21379300:+
Coord C1 exon
chr19:21375869-21375964
Coord A exon
chr19:21375965-21377388
Coord C2 exon
chr19:21377389-21379300
Length
1424 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
TTGTTTTATTTTTATTACAGAAA
3' ss Score
8.16
Exon sequences
Seq C1 exon
GTATTGATGTCTCTAAGCCAGATCTGATCACCTGTCTGGAGCAAGGAAAAGATCCCTGGAATATGAAGAGACACAGTATGGTAGCCACACCCCCAG
Seq A exon
GTAGGTGAGAGTGAATAAAACAGTTGACATAGATGAAAGGTTGGAAGATTACAAAAAAAAAAAAGCAGTCCCTATAATGTGATTTGGGAAGCTGTGTTCCAAAGCAAATAGATTCTGGGAAGCCTGAGGTGTGTGGTTTTTTTGTTTGTTTTCTTTTTGTTGTTGTTACTGTCACATAGGGCCATCTTCTGTCTTAGGCTTTTAAATTCTCTAAGGATTCTACTTTCCCTTCATTGATTTTCCTTCAAGTTCACAGTGAGAGCCAGAGTCCTCTTCATGGCATATAAAAGACTGCACAATCTGACTGCATTTCCATTGTTTTGGGGGACACACAAATATCTGCATGATTTTGAGAAACTTTATGTTAAACTATTTTTTTAGTTCTCTTTTGCATCATGTCTAAAATGTGTGAGAGTAGTGGTCACTGTTCTATTGGTTTTTATGTTAATTTTCTGCACATTCCATCTTTTTTTATTAGTATATTCTTGAAATATAGTCTGAAATTATAAAATATAATGTCTCTCTGCTTTGTTCTTTTTCCTCAAGATTGCTTTGGCTATTCAAAGTTTATTGTAGTTTTTTTGTTTTGTTTTGTTTTTTGTTTTGAGATGGAGTTTCACTCTTGTTGCCCAGGTTGGAGTGCAAAGGCGCCATCTTGGCTCATCGTAACCTCTGCCTCCAGCGATTCTCCTATGTCAGCCTCCCGAGTAGCTGAGACTACAGGCATGCACCACCATGAGAGTTTTTAGTAAAAACTCATGTTTTTATAAAAAGTTTTATTAAAAAATTGGATTTTTAGTATACTTGCCTTGGCCTCCCAAAGTGTTGGGATTACAGGCGTGAGCCACTACACCCAGCCTTTTTTTCTATTTTATACTTTCATTCCATTTTGGTCATAGGATGTAATTCATAAAATGTCAAATTTAACAAATTTTTATGACTCCGTTTTTGGCCTAACAGGTGGTCTATCAAAGAGAATGTTGCATAAGCTATTTTGAAGGATGTGTTTCCTCATATTCTTGAGGACTCTTCTCTATTTCTCTGTTAAAAATAATTGTACAGGCTGGGCGCAGTGGCTCATGCCTGTAATCCCAACACTTTGGGAGGCCGAGGCGAGCGGATCATCTGAGTTTGGGAGTTTGAGACCAGCCTGACCAACATGGAGAAACCCCATCTCTACTAAAAATACAAAATTAGCCAGGTATGGCAGCACGTGCCTGTAGTCCTAGCTACTCAGGAGGCGGAGGCAGAAGAATCGCTTGAACCCAGGAGGCGGAGGTTGTGGTGAGCTGAGATCGTGCCATTGCACTCCAGCCTGGGTAACAAGAGCAAACTCCATCTAAAAAAAAAAAAAATTGTATTATACTGCCTTCAGTTCCTCTCTTCACTTACTAATATTCTGTCTTGTTTTATTTTTATTACAG
Seq C2 exon
AAAGTGGGGTATTGAAATTTCCTACTATAATTATATTGCTGTCTAGGTGTTTCTTCCAGTCTGTCAATATTTGCTTTATATATTTGGAACCTTAGTGTGACATACACACAGACACACAGACGTGCACACACACACACACACACACAAAATTTGTCATAGGTTCCCAGTTAATAAATCTATTATTGTTTAATGTCTTTCTTTGTCTCTTTGCAGTTTTGACTTAAAGTACTTTATGTAAGATATGACAGTTTTTGACTTAAGATGTGGCTTTTGTAATACTATTTTGACCTCTTCTGCTCTCATTTGGTTAATATTTGCATGCAATGTCTAAATCTATCTTGCCACCTTCAGTATGTTTTTAATCATTAGATGTCAGCTGACCCTTGTAGAAAGGCAAATTGGATCTTGGTTTTTAATAATTTTAAATAAATTTCTTTATTGAAAGTATGTCTCTTGATTGGAAAGTTTTCTGAAACAAAGAGACTTACTAATTTTTTTTGTTGTTCTATTTGATTCTTGCATCTTTGTCCCACATTTTCTCTCTTTGTTTCTCTCTGTGGCTGTTTTATTTTTACTTTGATATGCTTTTACTTCTTTCTTATGTTGTTTTCTGTGTCTATACAGGCATATTCTTTGTGGTACGTGGGGGATTACATAAAACCTTTAAGAGATACAATGTATTTCAGTCTAGTTAAAAATGAACTTTTGTTGCATGCAAAAATTTTTTCTCATTACATATGTTCTCAGATTTGTTCTTGATGTTGCTAATTATATTTTTATATGTATATTTATTAACATGTTTATAATGATTTCTATGCCTTTATCTTTCAAATTTTGGGGAATAATTAAAAATTTCTTCTGTGCCATTATGATAATGCTAAGAAATGTATTTTTGTGTATGTGCGTATCTTTCCCAGAAAATAATGTGTTTTAATATGATTTTGTGTTGCTTTGTTAAATCATCTTATTTTCATTGGAAGCAACTGTTTTCAGCACCTTTTATATGTAAGGAAGTACCAATATACTTTTTAAAATTTGGTTATTTTTGAAGTTTGTTTTCTTTTTATTTAGCAGGACAGATTTGGTGATGGTATTATACTCACTTGATAACTATTTTCTTCAGATTTCACTATATCACACAGTTTTCTTCTGTCCTGAAAAATTTTTGTTGAGAATCCACTGGCTATCTCATAAGAGTATTCTTGCAAATAATATCACTTTTTTTTTTTTTTTTTTTGAGATGGAGTTTCACTGTTGTTCCCCAGGCCGGAGTGAAATGGCGCGATTTCACCTCGCTGTGTCCCAGGTTCAAGCAGTTCTCCTACCTCAGCCTCCCGAGTAGCTGGGATTACGGGCATATGCCACCACACCCAGCTAAGTTTGTATTTTTAGTAGAGACAGGGTTTCTCCATGTTGGTCAGGCTAGTCTCGATCTCCTGACCTCAGGTGATTCACCCACCTCAGCTTCCCAAAGTGCCGGGATTACAAGCTTGAGCTACCGCGCCCAGCCAACACATCACTTTTATCTTGCAGCTCCCGAGATTCTCTTTTCTGTGACTTTTAAAATTGTGCTTACATATGTGTTTGATATAAATATCTTTGTATTCTAGTTTGTTTGTTCAGCTTCTTCATTTTTACATCACTTTTTAAAAGATTTCTGTTATTTTTTATATTTTTTTACCTCCATAATTTCTGTTTTTCCAATATTTTAAATATTTCTGTTCTTATTTCCAGTTTTCTGATTTTCTGTAGTTCTCTGTGTTCATATTTTACTCATTGAGTATTCAATTTATTTTGTTTTTAAAATTAATGTATACATTTTTTATTTCTTTCTGAAAAATTTATAATAATTTTGTTGGTACTACATTGCCCTGTTTTGTATATATTCTAATCTTTTATTAAAATTTGCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172687:ENST00000311015:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGATCACCTGTCTGGAGCA
R:
GCCACATCTTAAGTCAAAAACTGTCA
Band lengths:
342-1766
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains