MmuINT0179484 @ mm9
Intron Retention
Gene
ENSMUSG00000071291 | Zfp58
Description
zinc finger protein 58 [Source:MGI Symbol;Acc:MGI:99205]
Coordinates
chr13:67591103-67595038:-
Coord C1 exon
chr13:67594943-67595038
Coord A exon
chr13:67593087-67594942
Coord C2 exon
chr13:67591103-67593086
Length
1856 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
AATCAACTTTTGGTCAACAGGAA
3' ss Score
6.4
Exon sequences
Seq C1 exon
GTCTTGCTCTCTCTAAGCCATTCCTGGTGACATTTCTGGAGCAAAGACAAGGGCCTTGGGACGTGAAGAGACAAGCAGCAGCCGCTGTGCACCCAG
Seq A exon
GTGTGTAGGAATGAGGGGGTGAAAGAACAGAGTTTTGGTCCAGAGATCCAACAGAAAGCCAAGCTTCACCATACGCATTGAGATAGTGCTCTCGAGGAAATCACTCTTTAGATCACTCCTTTCATGATTTTTGTTTATGGTGGTTTAATTTTCTTAAATTTTGTATTTCCCTGATCACCATTAAGATGTGCTCATCTTTACAGTGACTTCAAAGAACTTCATTTTTGAGTTTACATTGTAACTGACTTTGCAACCTTTGAAAAATCTACACACATTTTCTAAAGACCTATGTGTGAATCCATTGTAAGGCAGTAACTTCATGCATAAATATATTTTATATTCACTTATACTCAAATCACCTTATCAGAATTCTTTTTTTTTAAAAGATTTTATTTATTTATTATATGTAAGTACACTGTAGCTATCTTCAGACACTCCAGAAGAGGGCATTAGATTTCGTTACTGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTCGGAAGAGCAGTCGGGGTTCTTAACCGCTGAGCCATCTCGCCAGCCCATCATCAGAATTCTTTGTGAATGATGAAAATGTATCCTCATTTTTTTCCCTATTACACACTCACTAGTAAAGATTTAAAATGTATATCCTTTCTGGAAATATAGTCATGGATTAAAACTGCCCAAAACTCAAAAAAATTTAATAGTTCATCAATACATTTTCAGAATATTGTGAATTCAGGGTTTTTTTCTTGGAAGTTTGATTGTGTGTTACTCGGCAGTGGTTCATCTATAAGCATTTGTTTATCTGTAACCCATATAACTTTGTGGATAGATTATCCAATGATACGCACCTCAGGCCAGTGTAAGATAACGATATATATGAGTTCTAGTTCTGTGAGCATCAGGATTGTGTGTTTCCACTTCATGTGTAAGCAGGAGTCTCTGTTTTCATGTCTTGAACATTGTCTCTTTTCATTGCTCAGTGGGTGTTTCATCTTGTAAATTAATAGTTCTTACAAAGATGGCTAATTTTAACACTGTTTCTTTGACACTATATTGTCTTTAGCAGAAGTTATTCATAGGTTAACCTAAATTCATAGGTGAACCTAAATTTTTTTCATAATTTTGATAGTGTGATATTTGTCATCCTAGTAAAATATAATGCTGTCTGAAACCCATGGGATGTATTATTTAAAATTAGTGTAGAAATATTTATGATGCACATTTTCATTCATACCTATAATTCTAAAATTCATACGTAGGATAAAAATGGTGTTTCTGTATTGCTTCAGTCTCACTCAGTCACCACTGATCTTCTGTTTTCCAAGTTGATAATGCCAGGTGTGTCCATGTATAATATCTATGTGTACTAAGGATACATAATACCCTTAGGATATTCTTTTGTCATAGATAATGACTACTTATTTGGCTACTTAACTTGGAATAGTGTGCCTTTCTTTTTGTTTGTTTATTTGTTTGTTTGAGATAGGGTTTCTCTTTGTAACCTTGACTGTCTTGGAACTCAATCTGTACACCAGGCTGGCCTGGAACTCACAGATACCCACTTCTCTCTGCCTCCAGAGTGCCAGGATTAAAGGCATGCACCACTACTACCTGGTGGGCCTTATTTCTATAATCAATTTGACCAAGCTTTTATTTCAGTAGAAGCTTAGATTGTTTCCTCCTACTATATTTTCTGAATCATGCTAAATGAATACAGGGGTAGGAATGTTGTGTTCTTTCTGATTTATCAATAAGAATGTAAGTAGGAGTATATGTCTCCATTTAAAGGGAAACATTAAAAATATAAAGAATGTGCTAAGCTTTTGTTCATAAATCAACTTTTGGTCAACAG
Seq C2 exon
GAAAAACCGTCAACAAATGTAAAGATTTCAGCAAGGCCTTTTTTTGCAAGTCACTGCTTACTCAGCACCAGAGAATTCGTACAGGGGAGAAAGCCTTCAAGTGTGAAGAATGTGGTAAGGCCTTTAATAATCGTTCAAACCTTTCTGAACACAAGAGAATACATACTGGAGAAAAACCCTACAAATGTGAAGAATGTGGTAAGGCCTTTCGTATTCGCTCAAAACTTTCTACACACCAGAGAGTTCATACGGGAGAAAAACCCTACAAATGTGAAGAATGTGGTAAGGCTTTTAATAGTCATTCAAACCTTTCTGAACACAAGAGAATCCATACTGGAGAAAAACCGTACAAATGTGAAGAATGTGGCAAGGCCTTCAGTACTCGCTCAACATATTATAGACACCAGAAAAACCATACTGGGAAAAAACCATACAAGTGTGAAGAATGCGCCAAAGAATTTTCCTACCCTTCATTGCTTAAGGTACATCAAAGAATTCATTCTGCAGAGAAATCTTACAAGTGTGAAGAATGTGGGAAACCATTTTACTGTCCTTTATTGCTTAAGAAGCATCAAATAATTCATTCTGCAGAGAAACCCTACAAGTGTGCAGAATGTGGCAAAGCCTTTCACTACCCTTCATTGCTTAAGCGACATCAAAGAATTCATGCTGGAAAGAAACCCTGTAAGTGTAAAGACTGCGACAGGGCATTTTACTCTTCCGCATTCCTTAAGCGTCATCAAAGAATTCATTCTGAAGAGAATTCCTACAAGTGTGGAGAATGTGGCAAAAGGTTTTGTTCTTTTCCACACCTTCAATATCACCAAAGATTTCATTCTGGAGAGAAACCATACAAATGTGAACAATGTGGGAAAACATTTTCTACTCTCTCTTACCTTCCTTGGCATAAATTGCGTCATTCTGGGGAGAAGTCATACAAATGTGAAAAATGTGGGAAAATGTTTTACTCTACTTTGGACCTTAAAAAACACCAAAAAATTCATGAATATAAGTGTGGGGAATGTCACTATGGCTTTCCTAATTATGCAGCCCTTACTGCACACCAGAGAGTTCATACTGGAGAGAAACCTCATGTATGCGAACAATGTGGGAAAGACTTTTCTAGGATCGATAGCCTCAATCAGCATCAGCTTGTTCATACTGGAGAGAAACCCTATAAATGTGAAAAATGTGGCAAGTGCTTTTACCGATCTTCATCCCTTAAAAGACATCAAGGAATTCACTCTTAATAGAAAATTTGACAAGTGATATGTGATAAAAAATCTTGCAAAATATTCAGACCTTGCCCAAGACAAAGGAAATCATTGAGTAGAGAAGCCATATGCCTGTGAGGAATGCTGAGTGGTTTAACATGAAGTCAACACTTTCTACCATCAATAACGTTCATTCTGCAGAGAAACTTGCCCAACTGTGGAGGAAGTGACAGGCTTTTAGTGTTTCTTCAAACCTTAAATAACAATGATCTTCTTCCTGAACATTGACGTTATCATTTGAAGGATGTAGTAGAGGCATTAGTTATCATTCAATCCTGATTCAACCTCAATAATTCATTCCTGACAGAAACTGTACTTATGTGCAGAAAAAGACCAAGGCTTAGCTACTTATGTCTATATAAGCATGAAAGCCTAACATCTGAATGCGTGCTTTCCTGGATCATAGTGCCTTATGGGCCTATCTGGGGGCTTTTTCTTTTTCTTTTTCTTCTACTTTTTCTTTTCTTTTCTCTTCTTTTCTTTCTCTCTTTTTGGGGGGATGGGGCATTTTTTTGATTGTTAACTGGTGTAGTAGTGTCCAGACAGGACAAGCATCGCCACCTTGGGGAAGTGTTCCTGGGTTACGTAAGGATGGGGTGGGCAGGAGACTAATACGTCAGGAAGCATGGCTTCTGCTTCACTTGCTGCCCTAACTTCCCTGGAAAAGAGACAGCGACATTTATGTTGAAATAAACTATTTCCTCCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000071291-Zfp58:NM_001007575:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=NA C2=0.037
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0),PF054957=zf-CHY=PU(1.4=3.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.0),PF0013017=C1_1=WD(100=12.5),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF0013017=C1_1=WD(100=12.0),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=6.2),PF0009621=zf-C2H2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTCTCTAAGCCATTCCTGG
R:
TCCCGTATGAACTCTCTGGTGT
Band lengths:
345-2201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: