MmuINT0046026 @ mm9
Intron Retention
Gene
NA
Description
NA
Coordinates
chr3:36061554-36069263:+
Coord C1 exon
chr3:36061554-36061649
Coord A exon
chr3:36061650-36062977
Coord C2 exon
chr3:36062978-36069263
Length
1328 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TCTGTCTTGATTTCTTCCAGCCA
3' ss Score
8.6
Exon sequences
Seq C1 exon
GTCTTGCTGTGTCTAAGCCATACCTGGTTACCTGTCTGGAGCAAAGGAAAGAGCCCTGGAATGTAAAGACGCAAAAGACCATGGCCGTGTTCCCAG
Seq A exon
GTGAGTAGGAGCGGATGGAGCAGAGCATACAGAGCAGCGGTGAGCCGTGTGGGAAGCTCTGATCCCGGGAGCATTGGCTTTTCACAGATGCAGTTCTGTTTGTCCTTTGTCACCGAAGGGCATCCTTTTAAATCCTCTGAGCCTCATTGTCCTGCAGTCCCGTGCTTGGGGATTCACAGTGATAGCTGATATCTTCCCCTTCACCTGTGGGAGCTGTGTAAAGGGACAGTTCTTTCGTGGTGTTTGGGGGCCTCCGAAAACCTTTGGATATTTCTTATGACCTCTTTGTTGGTATACTCTAATAATTTAATGTGATAAAGAAGTTTTCTCTTAACATTTGTATATTTATTTTTTTAATTGTCTCATCTTTTTATAAACATTATAATGGGGTTTCTATGATTTTTTTTAACCACACACTGAATGCTAATGATTGACAGGTATATAGAGACAAAACTGAGAATTAGTTTTATGTAAAGACATTTTAACCATCACCTGTGTCTCCTCAGATTTTATAAGGTAATAGTTCTTTTTTTTTTCCTTCTTTACATTTCTTTTTTCTGAATTTTCAGCTTTTGGAGTAGGTTCCTTATGCCCATTAATATTATTAGTTTCAACCTGTGTTTTATTATTGAATGTCAATTATAAATACTGTTTATTGCAGAACAGTGTAAGATGAACTAAAATAAGAGTGAATTACCCACATGCCCATTTCCAGTACAACTGTATGTGTTTTTAGTTGCCTGGATAAATAGTGTCCCTTTTTGTTTCTGACTTGGATGTTTTCTGACTAGATTGTGTTCAATTGTCACTTTCCCCTGTCTCCGTGCGTATTCTTGGAAATGACCTTAAGTTTGTTACCTGTGACTTGATAAATCTGTTTCCATGTCTGAGAGACAAGTTGATTTCAAGGTAGCTTCTGAGAAATTTAAACTTTATTGCTTCTTTTTACTTAGCCTTTAACCATAATGTTATGTTAAAAGCACATAAAATGAAATTTATTGTCTGAAAGATTTTATTATTCTGTTTTATAGTGTAAGGTGTATCCAAATTGTTGTGCAACACATCTTTATAAACTTTCCATTTTACAAAAGTAAGATTCAGTCTTTATAAACAGAAAGGAGTGTTTTTTTTGTTGTTTGTTTTGTTTTGTTTTGTTTTGTTTTTCCAGTGTCCCTGTGGTCAGTGTTAGTGGAGCAATGAGGGCCACAGATTTTCCATTGTGGTGTTTGCTGATGTGCTAACCTCAGCACAGTTTTAGATGTTAGGTTTGTAAGAGTGTTCTTGAGAGTCTAGTGAGTGAAATAAGTGTCTGTCTTGATTTCTTCCAG
Seq C2 exon
CCATGTTTTCTCATCATAGCCAAGACTTTTCACCAGAGCAGAACATAAAGTATTCATTCCAGGAACTCATCTGTGGACCTCGTGGACAGTGTGGCTTTGACGCTTTGTACTTCCCAGGAGAAAGGGACTGTGTTGAGGAGGGTGACATCCTGAGAACCTGCTATAACGGGCACAACCCATTTCTGACAGCTGGCAACAGCAAAAGCTTTACTCCCAGGAGAGATCGGGCACAAGAGATGGCTCACAAAAACCCTCAGGTGACACCAGTTACTTGTGAGGAGCCGTGCGCTTCAGTCATTAAACAGCAGAGTCAGTTTTTGAAGCAGACCCCTTCTTTCAAAGATAATTTGGAAAATCCACAGAGGGTTCTAGTTAATTCTTCAACTACCGACTTCAACAATTTCAAGTGTAGCTTTGGGCTGAGCTTTCATTCAAACATTTTTGTAGATGGGGAACTTAAAAATGAAGGAAAACATTCTAAATGTAATCAATTTGAGAACTCCATCATGAAAAATTCGTTAGTATATAATCAACAAATAGGTCTTCCATGTGCCAAAACACAGAATTCCCATAAGTATGGCAGATTTTTTTCACATCCGGTATCACTGAACCAAAATTCGAGTACAGATATTTTGGAAATTCAGTATATATGTAAAGAAAATAGGAAGGCCTTCACTGAGGAGTCCAGCTTAAGTAATCTTCAGGACGTGTATATCGGAGAGACAGTTTATGAGGGTAATGAAAATAATAGTGACTTAAACCAAGAGTCAAATCCTGCCAGTCATCAGTCTGCTCAATTGTACAAATGTTACAAATGTGACACAGTCTTTCATCAGTACTCGGAACTTATTATCCATCAGTACATCCATATTCAAGATCAGATTTCCAAGGATATGGATTGCGACACAGCTTTCAGTCAAAGTTCAAGCCTTACGAGAAGTCAAGCTGGAGAAAAACCCTACAAATGTAAGGAATGCGGCAAAGCCTTTACCTACTGTTCAAGCCTTAGGCAACATCATAGAATTCATTCTGGAGTCAAACAGCACAAATGTAAAGACTGTGGCAAAGCCTTCTACCATAAATCACTCCTCACGCAACACCAGAGCATCCACGCTGGAAAGAAACCCTACTGCTGTAAATTTTGTGGCAAAGCTTTCAATCAAAGATCGACTGTTACTCAGCACCAGAGAATCCACACTGGAGAGAGGCCCTACCATTGTAAAGATTGCGGCAAAGCATTTCATCAAAGATCGAGCCTTAGTCTGCACCAGAGAGTTCATACGGGAGAAAAGCCCTACAAATGCAAAGACTGCGGCAAAGCCTTCAACCGCAACTCACTCCTCACTCAGCACCAGAGAATTCACACTGGAGAGAGGCCCTACCATTGTAAAGACTGTGGCAAAACTTTTAATAAAAAGTCAAGCCTTACTCAACACCAGAGAATCCATACTGGAGAGAAGCCCTATTCTTGTAAAGACTGTGGCAAAGCTTTTAATCAAAGATCAAGCCTCAGCCTACACCAGAGAGGCCATACTGGGGAGAAACCCAATAAATGTAATGAATGTGGCAAAGCCTTTAACCGTGTATTTTTCCTTACTCAACATCAGAAAATTCATACTGGAGAGAAGGCTTACCACTGTAAAGACTGTGGCAAAGCATTTAAGCAGAGGTCCAGCCTTACTCAGCACCAGAGGGTACACACTGGAGACAAGCCCTATCATTGTAAGCACTGTGGCAAAGCTTTTACCCAGAGGTCCAGCTTTACACGACACCAGAGGATCCACACTGGAGAGAAGCCCTACAAGTGTCAAGACTGTGACAAAGCCTTCAGCCGGAACTTACTTCTCATTCAACACCAGAGAATTCACACAGGAGAGAAGCCTTACCATTGTCAAGATTGTGGCAGAGCGTTTAATCAAAGGTCAAGCCTTACTCAACATCAGAGGGTTCACACTGGGGACAAGCCCTTCTGCTGTAAAGACTGTGGCAAGGCTTTTACCCAGAGGTCAAGCTTTAATCGACACCAGAGAGTTCATACTGGAGAGAAGCCCTACAAATGTAAAGAGTGTGATGGCGCCTTTAAATCCAGTTCCCACCTTGCCGAACACCAGTGCACCTCATTAGGCAGCTGCTTTGAAGACACAAAATTTCTCCAATATATATGAGTTTATTGTTCTGTTACAGCCAGTTAGCAAACACCGATGGATTTATCTTGAAAACAAGTAACATGTTTGATTATACAAAAGGTACTTTCTGTTGCAATACCTAACTGGATTTCCGGAGCCATATCCTGGTTTAATTAAGTAATAATATTTTTCTTTCTTGTCATTTTGTCAACCGGTTCTGTGTTAATAGTTGTATTCTCAGATGTATTTCCCAAACTTTGTTCAGACTGTATACATAAAACATACACACTGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCCGAAGGTCCAGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATTCGAAATGAGATCTGACACCCTCTTCTGGTGTGTCTGAAGACAGCAACAGTGTACTTACATATAATAAATAAATAAAAAAAAAAAACATACACACTGTCCAGTGTACACATAAAAGTGTACAGCGGGCGCCACACTGGAGAAGTCTTTGGCAGGTCTCCCTAGGATTTACACAACTAAATTGTGTAGCATAGAGCTTGGCTGTCTCCCCCCAGAAACATATAGAATTGTGTTTACTGTCCCTTCTACAACATGGTTAAGATGACATTTTCATGATGACACCCACAAGAAGCATCTTTAACCCTGCATGTGTATTTTTTCCTTCAGTCATGAAACAAAACTAGAGAGCCCAGATAGCAAAAAAGAAAGAAAAAAACTAAAAGTATATATTGAGTTGGTCTGAGGATCCTGACTTCTGAGTCTACTGCTAAAAAGACTGCAAATATATAGATGGTGCATGCTGAATCCACACTTTTATACAATTAAATTACATTTGGGGGGTGTTGTGTGCCACAGCATTCATGTGAGAGTCAGAGGACGGCTTCCAGCCCATTCTCTCTGTCATTTCGTGTTGTTGAACTCGGTTCATCCGGCTTTGCTGCAAGTGCCTTCACCTGCTGAGTTATCTCTACGATCATTGGATTTTAGGGTCTGGGACTTTCCTGGCCTCTGCCACACAGACCCCTGCTGTTTTCTGCCCTTTTTTAAATCAGAAAGTTAGGCAGACCACCTACTACAATTGCACCACAGTGCATATAATCTCCCTGTGACTTGAAGACATGACCATATTTAAAAATGAGAATGTACAGAAGATGTAGGGAGACATTTTTATGTTGAGTGTTCAAAACAGACTCCATAAAGCTAAAGGCCTTCTGGGGTAAGTTCTTCAGATCATGTCAAGTGAGATGTGGCTGTGTTAGAATCCTGATGGTGAGTGCAGAATCTGTAAGGGCAGAGAAGCACTGACATCATACTCTGATGTGATGCATTGTCAGAAGAGAGAGGATGATAATGATGGGAGATAAGCAGCATCTAGTTCAGAGTTGTGGAACAGCCGCCTGTAAGCTATATACGGGGAATGCCGTCTTCTTCCCTGGAGGGGAATCAGTTTTATCACACTGTCTAGGGTCTGTACCAGGGCTCTTTCTTTCTCTGTGTTGGCCTAGTCAACCTAGTCAGCCTGGATCAGTATTTGGGCATTAAGACCAGGATCATTGAGCCCTGTCTCACTGCATGTAGTACCTGGCAAGTACTTAGGGGTTTAGATTTCACATTTTGATCAGGTTATCCATATGCCAACCTTCTTCCATTTCATGGGACTGTATGGTGCAGAATTCCTTCATGGAAGCATTTTTGTTACTATAGGGGAATCATTCCAGTTTCCTGGTACGCAAATGGTGAAACCCATGGCCATCTAAAGGCAAAATACACTCAAGAATTTCTTCACATAGCTCTTCCAAGGCAACAAAACAATCACAAGGCACTCATGGCTGGAAACTTCTAGAAAACTTCAATGCAAAGCAAGTGGATAAATAATTGAACTTTGTATGATTTGATCAACACCAAGGAGGAACACAGTGATTGACACATTTGAATTTGGGAAGGTTTTCTTTAATTGTATTGCTTATCCTGATTCACTTCCACAAAGGCATTTTCTAGAAAAGTTTTTATTTCCATTTGTGTTGTTTTTACCTTGTTGAAAAATTTAGACTCTCGATATCTTAGAGAAAGTTAAAAAGATAACTTGGTTGTTGTTTCATGTTATTAAGTGGGAAAATAGTCGTAGTTTACTCTCTGTTGCTGTTCTCTGTTGCTGTGATAAATACCACAATCAAAAACAACTTAGGGAAGAAGAGGTTTGTTGAGGATAGGAACTAAAGCAGGAGCAGGGGATGGAATCGTGTAAGAAAGGTGCTCCTATAGCGCATGCTCAGCTAGCTTCCCTGAACCGGGACTACCTGCCTGCCTATGGGTGGCACTTGTCTACAGCAGACCACATTAGTCAACAGTCAAAACCATTCCAGACATGGCCATAGGCCACTCTGATCTGGGCAATTCCTCACTCCCTCAATTGAGACTCTCACTTTCCCCGTGATGTTCTTAATTCTCTGCATTAAAAATAAATGAGCCATACAGAAACAAAAAGAGAACAGTTCTGATGTCTGTACACTTAAATGATAAAACAGCACCAAAATTCTAGGTCTTATGTCAATTAATGCAAAGATTATGAAGACTCCAGCTCACAGTTTCACAATATTCTATGAGTACATAATGCTTGCTTAAATAGACATGTTCTAAGTGACTATATACATCTTGTATTCTAAATTGTAACTTGTGAACAGTTGCCTACAGCATATTTTAAAAACGCAAAGAATGATTTAAGATCTGCAGGATCCACTGAGAACTAAGAACATTTGTTTTGAGAACTGATAGTTTGCATGCACTTTTTTTTCTAGCTTAGTGCTACAGATGGTGGATGTAAATGCTAGCAAGAAATGTGCTTAAGATGCCAGTTCATGAGTGCCCCCTCTAGTTCCACCAAACTCACAGAGTCACAATTCCTTAGACTGGGGTTCTACAATACCACTTGATTTTTCTTCCTTCAAATGCAAGGTCAGTAGCATAAAGCTGTTGTCGACATGTTTAGTTTTTTGACAATGTCATGCTGTTCTGTATATTTGTTTGTTTGTTTGGCTTGTGACGCTTTATTCTGGATGTCTGTTTTTTTTTCTTTTTAAACATCTAATTGATTCTTTGTGAATTTTACATTATACACCCCCGTACCACTTATCTCCCCATCCCTCCATACCCACCCTCTGCCTTGCAACCCACCCCCTAACAGAGGGGAAAAAATCTTGATGTGGAAGCTGTGGTGTGTCAGTGTGAATCACAGTGTGTCCTTTTGCCCAAACAGCTCTACTTGCAAACGTTCATTCCAAGAGCCATTGGTGTGGTTCGAGGCCTCTGGCTTCTGCTACACCATCAATGCTGGATCCTCCCCATGGCTTCTCTCAGGTATCTTCTTGTTGCCCTGTGTCATGGAGATCCTGCAGCTTTGGATCTACAGGACCCGCCCCTTCATTTGCCCCAGCAGTTAATAGATGGGGTAGATGTTGGAGTGGGTGGATACTTCATATTAATTGACATATGACCTAGAATTTGGGTACTGCACAGTGTAAAGTATTTAAAGGAGTGAGTGTATAAGACATCAGTGGAAAGATTGCCAATAGGTGTACCAAGTACTCTGGGACAGAAAGAGTAGGACCAAGAGGAGCAACTGCAGCCAGCTCATGAACTCCCTCAGGCTGTGGGGCTAATGTTACAAAGGTCATCACAGTAAATGAAATGCCAGCAGCTCTTCTCCCATTGGAAGACACCAACCTACATACCCAGTGAATTTGTAAAAGACAAATTCAATTTAATGGAGCAATGAGTGTGTTCCACAAATGACTGCAGAAAAAAAAAAAAAGGAAAACTGAACAATGTAGAATTTACATAGAAAAACGAACATAGACATAAATTTTGAATTACACAAAAATCCACCAGAATGTGTTTCATTACTTAATTGGAAAATTCTGTAGAAGAAAGTCTACACAGCCCATGTCCTTTAAAAAAGGTGACAACTAGATGGTCCAGTGGGTAAAGGTACCTGCTGCCGACCTAGCAATTTGAGTTCAATCCCCAAGACCTACATGGTGAAAGGCAAGAACTGACTCTCACAGGTTTGTATTCTGACCTAAACACAAAAGTCAATAAATACGTAATTTTAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
-D3Ertd254e:NM_001101478:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCAAAGGAAAGAGCCCTGG
R:
CGGCTCCTCACAAGTAACTGG
Band lengths:
342-1670
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: