Special

MmuINT0179794 @ mm9

Intron Retention

Gene
ENSMUSG00000069184 | Zfp72
Description
zinc finger protein 72 [Source:MGI Symbol;Acc:MGI:3033356]
Coordinates
chr13:74508874-74512511:-
Coord C1 exon
chr13:74512416-74512511
Coord A exon
chr13:74510276-74512415
Coord C2 exon
chr13:74508874-74510275
Length
2140 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
CCTTACCATTTATTCAACAGGAA
3' ss Score
8.86
Exon sequences
Seq C1 exon
GTCTTGCTTTCTCTAAGCCCTATCTGGTCACATTTCTGGAAAAAAGACAACAGTCTTGGGATGTGAAACAACAAGCAACAGTGGCTACATACCCAG
Seq A exon
GTATGTAGGGCAGTATGAATGAGGGGACACAGATGAGAGGCCCAAAACTCCAACAGAATGTCAGACTTCTAAAATGTGGATTGATAAGCTGTTTCACCGGAATCATTTTTCGGACTCTCCATTTAATTCTTTAACTAAGGACATCTCATGTGGATATCATATCATACTTTTAAGTCCTCTGAGCTTTGTTCTTCTCCTCCAGTGATCTCTGCACTCATTCATGACTATCAAAGTAATTCCTTTTGCCTATGAAGACTGACATCATGATAGATGTTTCATTATTGTGTAGACCTCAGACATTCATATATACTTCTAAAGAACTCTTGTGTCAAACCATTATAACATTAGTATTCTTTCAGAATTTTACGGATTCATGATACTTCTTGTTTTACTTGGAATTCTATTTTCTGTGGATTTGTTTTTCCAGTCCAGTTTCTCACAAAGAAGTTGTTTAGATATAGTCTGATTGGATGGCAGTTAACAAAATATAAGACCATATCCCACAGAGAGGCAACAGTTTGGGGATAGTCCCTGCTCCAGGTGTTCAGGACTCACATGAAGTCCAAACTGCACATCTGCTACACGTGTACAGGGAGACATAGGTCCAGCCCTTGTATGTTCTTTGGTTGGTCGTTCAGTGTCTGAGAGCCTCAAGGGTCCAGCTCAGTTGGCTTTGATGGTCTTCCTGTGGAGTTCTTATCCCCTTTGGGGCTGTAATCTTTCCTCCTATTCTTCTATAAGAGCTTCCAAACTCCATCCACTGTTTGGCACTCTGGGTATCTGCATCTGTCTTAGTCAGATGGTGAGTGGAGCCTCTCAGGATAGCCAGGCTTGACTCCTGTCTGCAAACATAACAGAGTATGCTTATTAATAGTGTCAGGGATTGGTGCTTGTGCAATGTATTCTTCTAGCTGGGCTGCCTTGTCTGGTCTCAGTGGGAGAGGATGTATCTAGCCTTAATGGAGACTTGACATGCTAGAGTGGGGGGATACCCAGGGGGACCATACCCACTCAGAGAAGGAAAGGGAGCATGGGGAGGGATTGTGGGAGCAGATGACTGGGAGGAGTGCAGTGAATGAGATGTAAAGTGAATAAGTTAATAATAATAATAATAATACATTTATTCCACTGGAGGGAGAAAAGAAAATGTAAGACAATAAAATATCTATTAACTGTATCTATATTTCCAATACAATTTAGTTTTTATTTACCTGTTCCCATGTTTTCATACCACACTCAATAGTTGTTTTATCCTGCCAAATGAATATTTGTAGAAATTATACTAATTTTATCAAATATTTATGAATACATTGCCTTTACTGAAACTTCTGTGATCTACAGATAAATTTATTAACAATAAATTTGATAAATTTAAACTTATTTTAATTGTATAAAAATTATATAAAGGTATATTAAGTATTTTGAGTACACTATTCAGTAATTATATTCAAATTCTTATACACTATATTTTTAGAAAATAATTTTTCTTTTGAAACTAACTATATTTATGAAAGAAATTGTATACTTTTGTCTCCATGTAAACTATTCCATTTACCATTCTACTGTAAGTTTTACAAGTTTGTTTAAAATGATTTTATTTTATGTATATGATAAGTACACTGTAGCTGTCTTCAGACACACCAGAAGAGACATCAGATCCCATTAGAGATGGTTGTGAGCCACCGTGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCAGTACTCTTAACCACTGAGACATCCCTCCAGCCCCACAAGTTTTATTACTATAGAATCTTCAAGTAATTCAAGTCATATAATATATCTTTGTGTTTTATTTCATTTATCCTTTAAGAATTATCCTCATGGCAGATAATATATGATTACCTCTTACTGGTTGAATATTATTTGTATATTCCATATTGTCTTCACCGTTTCAGTGCAATGGAAGTTTAGGTTATTTCTGCCTGTGTTACTTTCTGAATAATGCCATAGTGATTTGGGCTGTAGAAATATGTTTGTATTTTCTGGTTGATGTGAGGGTAAATTTTTATATGAAATGTAATGGAATAAAAATATCTATGTTAATGATAATTATTACAAATATAAAGATTATAATTTTTATTAATACCTTACCATTTATTCAACAG
Seq C2 exon
GAACAAAACCCTATAAATATAAAGAATGTAACAAGACCTTTGTTCGGAAGTCACTCCTTATTCAACATCAGAGAGTTCATACAGGAGAGAAACCCTACAAATGTGAACAATGTGGCAAAGCTTTTAGCTGTTCTTCAAGCCTTACCCCACATCAAAGAATTCACACTGGAGAGAAACCCTACAAATGTGAACAGTGTGGTCAGGCTTTTAACTGTTCTTCTCACCTGTATAAGCATCAGAGAATTCACACTGGTGAGAAACCCTATAAATGCCCAGAATGTGGCAAAGCTTTTAACTGGTCTTCAAGCCTTACCCAGCATCAAAGAATTCACAGCGGAGAGAAACCCTACAAATGTGAAGAATGTGGCTTGTCCTTTAACTGTTCTCACCTGTATAGGCACCAGAGAATTCACACGGGTGAAAAACTTTACAAATGCGAAGAATGTGGCAAGGCCTTCAACTGTTCTTCATATCTTAATTACCATCAGATACTTCATACTGGTGATAAACCCTACAAATGTAGAGAATGTGGCAAAGCCTTTACCATGGTTTCTTACCTTACTCGACACCAGAGAATTCATACTGGAGAAAAACCCTATAAATGTAAAGAATGTGACAAAGCTTTTAGCAATTGTTCAGCACTAATTCAACACCAAAGAATTCATACTGGAGAGAAACCCTACAAATGCAGCGAATGTGGCAAAGCCTTTAATAATAGTTCAAGCCTCACTCATCACCAAAGAATTCACACTGGAGAGAAACCTTATGAGTGCAAAGAATGTGGCAAGGCCTTTAACTCTTCTTCACACCTTAATTATCATCACAGAATTCATACTGGAGAGAAACCCTATAAATGTGAAGAATGTAGCAAAGCCTTTAATAATTTTTCAGCCCTTATTCAACACCAAAGAATTCATACTGGAGAGAAACCCTACAAGTGTGAAAAATGTAGCAAAGCATTTAATAATTGTTCAGCTCTTAGTCAGCACCAAAGAATCCATACTGGAGAGAAACCCTATAAGTGTGAAAAATGCGGACAGGGCTTTAACTGTTCTTCAAACCTTAAACAACACCAAAGAATTCATACTAGAGAAAAACTCTACAGCTGTGAAGATTCTGGGAAAGCCTTTAATAATGGGGAAGCCCTTCCTCAATACCATAGAATCCATACGTACTAAATCCATATGTACTAAAGAGTAACCCTATAAATGCAGAGATGGAGGCAATGTGTTAAACAGTTATGTTATACTTTTGCAACATCAAAATTTTATATGTAAGAGAAACCCTACAAATGAAAATATGTGTCAGATCCTTTATTCATGCCATAATCAATGAGCAGGGATTATGTATTGGTAAGAAACCTTGCAAATAGAAATAATGTTGCACAGCTTTTAACGGAAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000069184-Zfp72:NM_001081680:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact





	

	
No protein impact description available





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.013
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NA

							
C2:
PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.6),PF097235=Zn-ribbon_8=WD(100=10.2),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.6)

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000089063





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
NA
  



Associated events






Conservation


Human
(hg38)
chr7:64979537-64981386 
ALTERNATIVE
HsaINT0186173
(ZNF117)
Human
(hg19)
chr7:64439915-64441764 
ALTERNATIVE
HsaINT0186173
(ZNF117)
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr18:60461428-60466131 
LOW PSI
BtaINT0006101
([1])
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
No suggested primer sequences

				
R: 
No suggested primer sequences

				
Band lengths: 

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]










Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"