BtaINT0007645 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MP77]
Coordinates
chr18:60987356-60988020:-
Coord C1 exon
chr18:60987858-60988020
Coord A exon
chr18:60987372-60987857
Coord C2 exon
chr18:60987356-60987371
Length
486 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
AATATTTCTTTTTCTGATAAGCA
3' ss Score
-1.25
Exon sequences
Seq C1 exon
CCCACAGCCACATGGCATCTGTACTTTGTATTTCAGGGATGGCTGACATTCCAGGATGTGGCCATAGACTTCACCCAAGAGGAGTGGGAATGCCTGGACCTCGGTCAGCGCAAATTGTACAGGGACGTGATGTTACAGAACTACAGGAACCTGGCCTCCTTGG
Seq A exon
GTGAGGATAACTGCCTTCCAAAATCCCTTATCTGGGTTTTGGTTCCATCATTTCTAAAATGTCTTCTGAAATCTTCTCCTTCCCACAATAATTTCAGATCCCTGCTTTCTAGGGGAAAATGGGAATTTATGAGTTTAGAAAAAAGGCTTTATGATTCAATATGATTGTAACCTTTTGCTTCCTTGATGTAGTCTGCCTCCTTCAGTCTAGCTTAGTGGTAATTGTATAAGTTTCATAGTATTAAATAGCGGTACCCTCCTCTTCAAATCACATGTCCACTACTTACTTTTGCCTTAGTGGTACTTGACCAGAATCTCAGGATCTGTTCTTTATGTATTTGTTAGTATTATAAAGCTGCTTTCAGTAAAGTATTTGGGGAAATCATTCTCTAGGCTGTATTAAGCACACTTTCTCTTCTCACCAATATGTATTATATTGGAAACTGAAGAATCTTCTAGCAAAAAATAATATTTCTTTTTCTGATAA
Seq C2 exon
GCAGGTTTTGTGGTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038755:ENSBTAT00000056450:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=74.5)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development