GgaINT0003114 @ galGal3
Intron Retention
Description
NA
Coordinates
chrUn_random:54168734-54169581:-
Coord C1 exon
chrUn_random:54169455-54169581
Coord A exon
chrUn_random:54168845-54169454
Coord C2 exon
chrUn_random:54168734-54168844
Length
610 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
CCCTGTTTCTGTCATTGAAGCTT
3' ss Score
6.1
Exon sequences
Seq C1 exon
GAGCCCGTGAGCTTTGCGGAGGTGGCCGTGTATTTCAGCAGGGAGGAGTGGGCGCTGCTGGACCCTGCGCAGCGAGCGCTCTACCGGGACGTGATGCTGGAGACGTACCAGTGCGTGGCCTGGCTGG
Seq A exon
GTGAGGGCTTTGCTGCCTTTCCTCCTCGTTAGGGCTCCATGGGCTGTGCAGGATGAGCCTCTGCATGCCGGGTCTTGAATAACTGCCATGCAGTTACATATTGAGTAACACCACTGTGACAGCACAAAGGAAACACAGAGTAGCATGAGTTTCACGAGGCCTTCTTGTGCTCAGCACTGTGATAAAAGCCTCAGAGTCAGTGCTGGCTCGTAAGCAGCAGCAGGAAGGGGGATGATCAGATTCCTGCAAACAGCTCTTGTGTTGTTGCACTGTATGAGGCCACCAGCTCCAGCTGCTGGACGACTTGCTGGTTACTCCTTTAGAATTTAGGATTTTCCATTCAATTGCCATAAATATTTTGATGCCATGCTCACTGATATATTGTAAGCAAGTAAGCATGCTGTTGTAATGTTAATTTTAAAGCAAATATCCCTTCATAATTTCCAGAGATGTAAAAGCTTTCTTTGCTCCAAAGGCAGTTGTGGCCCCACTGCCATTCAGGCCCAAATGGTGCTTTCTCCGTGGGGAGGGACACACAGAGGAGATGTTGAACAGTCACTGTGCCGCAATGATGGAAATGCTCTCATCTCCCCTGTTTCTGTCATTGAAG
Seq C2 exon
CTTCACTTCCAGCCCCCAAACCCGGGCTGATCTCCCTGCTTGAAGGAGGGGAAGACCCCTGGATCCCAGATGTGCGTAGCCCGGAGGCCGTGCCAGGAGACCTAAGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022057:ENSGALT00000035600:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.474
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCCGTGAGCTTTGCG
R:
CTGGGCTTAGGTCTCCTGGC
Band lengths:
238-848
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]