MmuINT0179833 @ mm9
Intron Retention
Gene
ENSMUSG00000045757 | Zfp764
Description
zinc finger protein 764 [Source:MGI Symbol;Acc:MGI:2443580]
Coordinates
chr7:134549680-134550336:-
Coord C1 exon
chr7:134549935-134550336
Coord A exon
chr7:134549794-134549934
Coord C2 exon
chr7:134549680-134549793
Length
141 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGA
5' ss Score
8.51
3' ss Seq
TTTGCTATTTTTCCCTTCAGGAC
3' ss Score
11.72
Exon sequences
Seq C1 exon
ATAGTTCCTGAGATGCCGCGCCCAAGTCCACATTTTTACGCGGTCTTCCTGAAATCTCCGCTGTGCTCCTATCAGTTTTCAATTTTCACCTACATTAAGGTGCCCACAGACCTGGTTCCTGTCCCTTTTCAGCCCTGGTACCCGACCACGGACACCGTGAACTGAGAAGGCAATCCCAGGCGTGCGGGGCTGACCCAGGGACTGTGCGGGGAGTCCCCATGGCGCAGAGGATGGCCCGGGGAAGGGCCTGGGCTCCGCCTGCGTCCTGTAAACCCGAGGCTGTGAGCTTCGCGGACGTGGCCGTGTACTTCTCCCCGGAGGAGTGGAGGTGTCTGCGGCCGGCGCAGAGAGCCCTGTACCGAGAGGTGATGCGCGAGACCTATGGTCTCCTGGCCTCTCTCG
Seq A exon
GTGAGAACCTTCCTGGCCGCCTGTGTTCGCGCCTCACGTGACACCGTGGGTCCTGCGTGGCAGCAGAGAGACCTGGGCACGGGCGGTCGGAACCAAGTGGGTTGTCCTCTTGACTAGTGGGTTTGCTATTTTTCCCTTCAG
Seq C2 exon
GACTTGGAGGCGCCAAACCAGCACTCATCTGCTGGGTGGAGGAAGAGTCCGAAGTGTGGGGACCCTGTGCACAGGATCCAGAGGTGGCCATGTGCAGGACAGAAGTCCACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000045757-Zfp764:NM_146203:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=66.1)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTAAACCCGAGGCTGTGAG
R:
GACTTCTGTCCTGCACATGGC
Band lengths:
244-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: