RnoINT0168635 @ rn6
Intron Retention
Gene
ENSRNOG00000031003 | Zfp764
Description
zinc finger protein 764 [Source:RGD Symbol;Acc:7540019]
Coordinates
chr1:198838481-198839228:-
Coord C1 exon
chr1:198838750-198839228
Coord A exon
chr1:198838595-198838749
Coord C2 exon
chr1:198838481-198838594
Length
155 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGA
5' ss Score
8.51
3' ss Seq
TTTGCGATCTTTCCCTCCAGGAA
3' ss Score
12.17
Exon sequences
Seq C1 exon
CGGTGACGTAAACCTTGGGCGGGACCCCATAGGAAGCATAGTGCTTAAGACAGCTCACCCCAACACACACACGCACACGCATATACACAAGTACTGTTACGATTTTTATGAGTTCATCGCCAAGTCTTGCTGCTGTACCTGCTTCTATGAGTTTTCAATTTTTACCTACTTTAGGGTGCTCACGGACCTGGTTTCTGTCCCTTCTCAGTCCTCGTACCTGGCCGCGGCAACCTGGGTCCGGGCAGGCGACGCTGAGGGCTCTGGGCTGACTCGGGGGTCTAGGCGGGGAGTTGCCATGGCGCAGCGGATTACCCCTGGAAGGGCCTCGGCACAGCCTGAGTTCTATAAGCCCGGGACTGTGAGCTTCTCAGACGTAGCCGTGTACTTCTCTTCGGAGGAGTGGAGGTGTCTGCAGCCGGCGGAGAGAGCCCTGTACCGGGAGGTGATGCGCGAGACCTACGGTCTTCTGGGCTCTTTCG
Seq A exon
GTGAGAACCTTCCTGGTCACCTAGAGTAGCGCTGTGCTTTACACTGTGGGTCCTGCAGTGCAGCAGAGGGCCCTGGGCACGGGTCAGGCCTTGGGCGGTACTGACCAAGTGGTCCGTCGTCCCCGACTAGTGGGGTTTGCGATCTTTCCCTCCAG
Seq C2 exon
GAATCCGAGGCGCCAAACCAGCGCTCATCTGCTGGGTGGAGGAAGAGACCGAACTGTGGGGACCCCGTGCCCAGGATCCAGAAGTGGCCATGTGCAAGACTGAAGTCCACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000031003:ENSRNOT00000052100:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.129 A=NA C2=0.077
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=66.1)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATAAGCCCGGGACTGTGAGC
R:
ACTTCAGTCTTGCACATGGCC
Band lengths:
242-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]