GgaINT0101061 @ galGal3
Intron Retention
Gene
ENSGALG00000019711 | ZNF777
Description
NA
Coordinates
chr2:405608-405873:-
Coord C1 exon
chr2:405742-405873
Coord A exon
chr2:405649-405741
Coord C2 exon
chr2:405608-405648
Length
93 bp
Sequences
Splice sites
5' ss Seq
GAGGTTCAT
5' ss Score
1.75
3' ss Seq
ATCTGGACGTTTGCAGACAGGCA
3' ss Score
-1.25
Exon sequences
Seq C1 exon
GTCCCTGCGTCAGGTGAGGACGATGCTGCCTGTTTGCCAGAGCAGGAGTGGGGCGGTGTGGACAGCCGGCAGCAGGAGCTGTACAGGATGGCGGTGAAGGGGAGCTACGAGGCTGTGGTCTCTCTCGGTGAG
Seq A exon
GTTCATTCCTTGCGCTTGTGTCAGACTCTGTCATCTCCTAGGCTGAACCTTGCTTTGCATAGGTTGCTCTGTTATCTGGACGTTTGCAGACAG
Seq C2 exon
GCAGTAAATGGTGAGGCCTTGGCACCTTTGGCACCGTTAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000019711:ENSGALT00000007818:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.409 A=NA C2=0.429
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=86.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCGTCAGGTGAGGAC
R:
CTAACGGTGCCAAAGGTGCC
Band lengths:
169-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]