BtaINT0007950 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MUV6]
Coordinates
chr18:65900426-65900953:+
Coord C1 exon
chr18:65900426-65900552
Coord A exon
chr18:65900553-65900836
Coord C2 exon
chr18:65900837-65900953
Length
284 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
TCGCCCGTCTTCTCCTGCAGGCC
3' ss Score
11.53
Exon sequences
Seq C1 exon
GGCCTAATGGCCTTTGAGGATGTGGCCGTGCACTTCTCCCAGGAGGAGTGGGGGCTCCTGGATACAGCGCAGAGGGCTCTGTACCGCCGGGTGATGCTGGAGAACTTTGCCCTCCTGGCCTCGCTGG
Seq A exon
GTAAGTGCTGGGTCCCCACGCGAAGCCAGGCTGGGCTGCCAGCACTAACCTCTCATCGCCTGGCAGCCACGTGCCCACTGGCCAAGCATCCCTGTTAACTGTGGTGTCTCAGCACTCAGTCCCCTGCTGGTGCTGCCAGCACGGTTTTCCTCACTCGTGGGAGGAGGTGTGACCCTGCCCTGGGGTATGCCCTTGGCCTCCTCATCCTCACAGACGGTGCTGTCTGCGTCCCATGAAGCCCCAGCCCCTCCGTCTGCCCCTCACTCGCCCGTCTTCTCCTGCAG
Seq C2 exon
GCCTGTCTGTGTCCCGGCCCCGTGTGGTCACGCAGCTGGAGTGCGGCAACGAGCCCTGGGTTCTCAGTGGGGCGGACGTGACCTTGGCCTGGGATGCCCAGAGGAGGCCCCACCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039453:ENSBTAT00000055447:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.225
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGGCCTTTGAGGATGTGGC
R:
GTGGTGGGGCCTCCTCTG
Band lengths:
238-522
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development