HsaINT0186864 @ hg38
Intron Retention
Gene
ENSG00000083812 | ZNF324
Description
zinc finger protein 324 [Source:HGNC Symbol;Acc:HGNC:14096]
Coordinates
chr19:58469180-58469844:+
Coord C1 exon
chr19:58469180-58469306
Coord A exon
chr19:58469307-58469727
Coord C2 exon
chr19:58469728-58469844
Length
421 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
CCTGCACCTCCTCCTCACAGGAC
3' ss Score
10.36
Exon sequences
Seq C1 exon
GACCAGATGGCCTTTGAGGATGTGGCTGTGTACTTCTCCCAGGAGGAGTGGGGGCTCCTGGACACAGCCCAGAGGGCCCTGTACCGCCGCGTGATGCTAGACAACTTCGCACTTGTGGCCTCGCTGG
Seq A exon
GTAAGGTCCTAGATACTCCATGAAATGGGCAACTGATAACAAGCTGACTGGCCAGGGCTGCCCCCTCACCTCCCTGGTGGCTGACGAGCAGGCCTATACCTTGCAGCCAGGAGCCATGTGGAATAGGGGTCTGGTCCTATAGACATGCAGTCTGGTTGGCTCAACCACTCCCTGTGGCGCTGTCCGGCTGTGGCCTCTCCGAGCCTTGGCTCAGTCCCCTTCCTTTGGTGCCCTGGGCACAGTTGCTGCCCTGGGGATGAATGAGCTATTCCTGTGAGCCCCTTGCCCTGTGCCATCTTTAGATTCTGCAGTTGCACAGATGACATTTTCTGTTTCCGTGAAGCCCTGACTCCTGCCCTCTGTTTGGAGGTGGGTTATCTTGAGCTGGGGCTGGACTCTAACCTGCACCTCCTCCTCACAG
Seq C2 exon
GACTCTCCACCTCTCGACCTCGTGTGGTCATCCAACTGGAGCGTGGCGAGGAGCCCTGGGTTCCCAGTGGAACGGACACAACCCTGTCCAGGACCACCTACAGGAGGCGCAACCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000083812:ENST00000536459:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.550
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=100.0)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGCCTTTGAGGATGTGGC
R:
AGGGTTGCGCCTCCTGTAG
Band lengths:
238-659
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains