MmuINT0178989 @ mm9
Intron Retention
Gene
ENSMUSG00000004500 | Zfp324
Description
zinc finger protein 324 [Source:MGI Symbol;Acc:MGI:2444641]
Coordinates
chr7:13554144-13554829:+
Coord C1 exon
chr7:13554144-13554270
Coord A exon
chr7:13554271-13554712
Coord C2 exon
chr7:13554713-13554829
Length
442 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAAG
5' ss Score
6.93
3' ss Seq
TGCTCCTTATTCCTTCCTAGGAC
3' ss Score
9.72
Exon sequences
Seq C1 exon
AGATGGATGGCCTTTGAGGACGTGGCTGTGTACTTCTCCCAGGAGGAGTGGATGTTCCTGAATGCCGCCCAGAGGGCCTTGTACCGCCATGTAATGCTGGAAAACTTCGCACTTGTAGACTCCATAG
Seq A exon
GTAAAGGCCTGAGTTGAGTCCTTCATTGGAAGCAAAGCTGGGACCAGGTATGGCAGGCAGCTAAGCACACCAGGTTCAGGAGCTATTACAAGTGTCCACTCTCTCCCTAACTGTTTATGAGTATGACCCTCTATCTATAGGGATGTGAGAGGAAGGGCGGTGCCCTGGACACATATAGTCTGATAAACATAACCATTTCCTGTATCCCTGGGGTGCTGGCTGTCTACATTCTTCTGTGCCTGAGTTCTAGCACCTTCCTTTGGAGTGGCTGATCTAGTAGTTCCTTATGGGAACCCTTGAGCCGGGCCTGCAGTCCTCCTGTATCCTGTGGGGTTTTGGGTGCAATTGCATGGTTGACATCCATATCCCACACCCTGCTCTCTATTGGGGCTGGACTGTCTTGAGCTGGGGCTGGCCTCACATGCTCCTTATTCCTTCCTAG
Seq C2 exon
GACCTTCTGTCTCCCGGCCTCGTGTGATCATCCAACTCCAGCGTGGTGAGGAACCCTGGGTTCCCAACAGGACAAATAGAGGCCCAGGCAGGGGTGCCCACAGGAGATCCAGCCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000004500-Zfp324:NM_178732:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.708
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGGATGGCCTTTGAGGA
R:
AAGGCTGGATCTCCTGTGGG
Band lengths:
243-685
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: