HsaINT0186867 @ hg38
Intron Retention
Gene
ENSG00000249471 | ZNF324B
Description
zinc finger protein 324B [Source:HGNC Symbol;Acc:HGNC:33107]
Coordinates
chr19:58453696-58454344:+
Coord C1 exon
chr19:58453696-58453822
Coord A exon
chr19:58453823-58454227
Coord C2 exon
chr19:58454228-58454344
Length
405 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGG
5' ss Score
8.92
3' ss Seq
TCACCTGCTCCTCCTCACAGGAC
3' ss Score
11.69
Exon sequences
Seq C1 exon
GACCTGATGACCTTCGAGGATGTGGCCGTGTACTTCTCCCAGGAGGAGTGGGGGCTCCTGGACACAGCGCAGAGGGCCCTGTACCGCCACGTGATGCTGGAAAACTTCACACTTGTGACCTCACTTG
Seq A exon
GTAAGGCCCTGGGTGCTCCATGAAAAGTGCACTTGGTGACAATCAGGACTGCCTCTTCACTTCCCTCCTGGTTGATGAGCAGGATCAAATCTGGCCAGGGCCACGTGGAACAAGGGTCTGGTCCTGTAGACACAAAGTTTGGTTGGGTCAGCCACTCCTTGCCGCCCTGTCCAGCTGTGGCCTCTCTCATGCCTGGGCTCAGTCCCGTTGCTTTGGTGCTCTGGGCACAGTTGCTGCTCTGGGGACACATGAGCTATTCCTATGAGCCCCTTGCCCTGTGCTATCTTTAGATTCTCCCAGTTGCACAGATTACTGTCTATTTCCATGAAGCCCTGACTCCTGCTCTCTGTTGGGAGGTGGGTTGTCTTGACCTGGGGCTGGGCTCTCACCTGCTCCTCCTCACAG
Seq C2 exon
GACTCTCTACCTCCCGACCTCGTGTGGTCATTCAACTTGAGCGTGGCGAGGAGCCCTGGGTTCCCAGTGGAAAGGACATGACCCTGGCCAGGAACACCTACGGGAGGCTCAACTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000249471:ENST00000336614:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.135
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=100.0)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGACCTTCGAGGATGTGGC
R:
CAGAGTTGAGCCTCCCGTAG
Band lengths:
239-644
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains