RnoINT0168654 @ rn6
Intron Retention
Gene
ENSRNOG00000006925 | Zfp786
Description
zinc finger protein 786 [Source:RGD Symbol;Acc:2293500]
Coordinates
chr4:77502738-77507032:-
Coord C1 exon
chr4:77506906-77507032
Coord A exon
chr4:77502894-77506905
Coord C2 exon
chr4:77502738-77502893
Length
4012 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGG
5' ss Score
9.31
3' ss Seq
TATCTGACTTTTCTATACAGATA
3' ss Score
8.98
Exon sequences
Seq C1 exon
TTACCGCTGACTTTTGAAGATGTAGCCATTTATTTCTCTGAGCAAGAGTGGCAGCACCTAGAGACATGGCAGAAGGAACTTTACAAGCAAGTCATGAGAACCAATTATGAGACTCTCATCTCTCTAG
Seq A exon
GTAAGGAGATTTCAACTTCTGTGGCGAGTCTTGCAACGGGATCTGCTGAGAGCCCCTGTCACTTTGATACTCCTGTTAAGTAGCAAGATTGCTTCCATACAAACCCAGAAAGGCTTTTTTAAATCTCTTTGCTGTTGTTGTTAATACACATTACCTGCTTTTACTTAGAGGTAGACCTTGCAGGAAAGTATTTAAGGTAACATGTAATATCATAGTCAGAGGTAGCCAAGATGTATGTTGAAACATCACAATTTACTCTGAGATTGCCCGATTTTCCACTGAGAAGCACACCTGTCTTGTGCCCATAAAGTACCCGTGTGCCTTAACCTAGAGATTGGCTTCCTTGCAGTTTTCTAGTGGAGTTAAGATTGCAAGAAGCAGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCAAGGCCCTGGGTTCGGTCCCCAGCTCTGAAAAAAAAAAAAAAGAAAAAAGAAAAAGAAGATTGCAAGAAGCAAATGGTCTTCCCTGTAGTGTGATTCTGGAAGAGTGTACACTGAGGTGTTTAAGAGTACCTGACTCTGGTACTCCTTTAGTTCTTCTCCTTCTTTTTCCTTTTTCTCCTCCTCCTCCTCCTTCTTCCTTCCTCCCTCCTCTTCTTGTGTGTGATTCTAGAGATGACACCAAGGTCTTTGCGTGTACCACCCAAGGGCTGTACCACTGACATGTACTTACAGCCCCTTTAAAGTTCTTGTTTATTGGATTTCTGTTGCTGTTTCATAGTTTTTGTGAGACAAGGTCTCACTGTATAGCTGAAGCTGTCCCAGAACTCACTATAGAGACCAACCTGGCCTTAATCTCATAAAGATCTGCTTTTCTTGAGTGCTGGGGTTAAAGGTATTTACCAGCCAGTGGTGGTGGTGGTGGTGGTGGTGGTGCACCCTGGTATGTACTGATGAGGCAGAGGCAGGAGGATTATGAGTTTGAGACTAGCCTGTGCTACACATCTACACATTTGTGGGTCCTAGTGGTGCACACTTTTTAATCCTAATACTTGGGAGCCAGAGGCAAGTGAATCTTGTGAGTTTCAGGCCAGCATGGTCTACATAGAGAATTCTAGGACACGCAAGGCTACAAAGAGACCCTGCCTCAAAAAGGATGTTCTTGCTTACACCTGGCTCGTTTTTCTTATCAAATGCATTTTTAAAATGAATCTGGAGCTAGAGAGATGACTCGGTAAGTAAGAGGTAAAGCACTTACCTTGTCAGCATGAAGACCTGAATTTGCACACCCAGAGTACACCTAAAAAGATGAGTGCAGCAGCTCTCATCTGTTATGTAATACCATGATGGGCAGGGTCAAAGGTCAAGACAGGTGGCTCCCTGGCAGAACCTGACCTCCATGGCAAAGTCTCAGATCAATGACAGATCCCGTCACAAAATTTAAAAGGTGGACAGTGTCCTGAGAACCAATACCCCAGGCTGTTCCTTGCCTTCTGTGTACATGCCATATAGCCCCTCACAGCGTGCACACATGAAAAAGCATGCGTGAAGTGAGCCTATTGGGAGAAGCATAAAGTAAAAGATGAAAGCCTCCCATTTGATTCTGGGTTTGCTTTTTTATTTTTTAAATGTATGTGTGTGCGTGTTTTGCCGTGTGTATGTTTGTGCATCACACGCACGCCCAGAACCCAAAGAGGCAAGAAGAGAGTGTTACATTCCAGAACTGTAGTTCCAGGTGGTTGTGAGCCATGTGTGGACACTGGGAATTAAACTGTCATCCTCTGGAAGACCAACCAGTGCTCTTAACCACTGAGACACTGCTCCAGCTCCAAGTCAGACGCTTTTAATCATTTCTGTTTTCATTGGTAAAGTAGTTTTCGTCTGTGCTAAAAAACGGCAACACATTATTTTATTTGTTAAGTTTAGTAGTACTGATCGCTTAATATGAAATATTGTCTTACTTATACCATCCCTCTTTTATTTTTCACCTTCCTAGTTTTTTATGTGTGCCTATTAAATAGGTTTATAATTTAAAATAATATATTTAAATGTCTAGATCATGTGTTATTAACTTTATTTTTGTGCCAGAATAATTTAAATTTTCCTATTAATATTTTATGTGTATAAGTGGTTTTATGTGTATAAATGTATAAGTGCCTGCATGTATGTCTGTGTACCACATGTATACGGCACACAGAGGGAAGAAGAGGGCGTTAGATCCCTCTGGACTCAAATTACAGATGGTGTGAGTTGTCACGTGAGTGCTGGGACTTGAAACTAAAAGGACCTGGTCCTCTAAAGGAATAGCAAGCGACCTTAACCTCTGAGTCATCTGTTCAGCCCCTGGATTAATTTTAAAAGGATTTGAAGAAATTAAATTTAGTGTATTGTTAATTTTTTCCTTTTTATTTTTCCCCTTTTATTGAAGATAGATTCTTTTTTCACATATATCCTGATCACAGTTTCTCGTCCCTCTACTCCTCCCAGCCCCTTCCCACCTCCCCTGCCATCTGAGTCCATTTCCCTTTCTGTCTCTCATTAGGAAAAGAACAAGAGGGTTGGGGATTTAGCTCAGTGGTAGGGCGCTTGCCTAGCAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCAAAAAAAAAAGAAAAAAGAAAAAAAAAAAAGAACAAGCTTCTAAGGGATAACAGTAAAACATGCATATTCCATTAACTCTTTATCTCCTAACTCCTTCAGTATTTAAAAATAAGGTAATTCCTTCTCCTACACTCCCTCCATATCTCCTGTTTACTCATAACAGCGTATCTGCCTTCATATTATAAAGTTTCTGAAACATATTCATTCATCATTGTTAACTTTCCCAGGCTCTGTCTATGAATTTTTCCTAAAACATGTAACCTATGACATTAATTTTATTTTACACAGAACCAGTAAAAGTTGTCGATATAGAAAGAAATATAGTCTACATTGTCAGCCTTGCTGTCCCCAAATATGCCTCCAGAGCATCAAGTTCAATGAATTATTTTTTATCATACTCCTCAGTTATTAAAAATCATGTTTCATTTTGATTTGCTTTATGGTTAGGCCATGACCTGCTATGATTTTGATTTGTAATTGTTTTCTCCTTTACTCGGGCTTTTATTGATCCCCTCAGATTGTCCCTCCTCTCTGTCATACAGTCAATTATGTAGACCCTTTAAGCCTCTGTCAGTTTGTTTCAAAACAATCTGTATATTCAACAGTTCCACTCGAAGTCTCAGAATGACTTCTCAAGGTCTCTAAACTGGTTATTAGAAGCACAGAACAAAGGACCAAAAGCAAGGGAGGCAGGTTTTGTTACTCTTGCTGTTTGTTTGTTTTGTTTTGTTTTTAGAGAATGGAAGATGGTCAGATACCAAACTGTGTTAGAGATAGGAAAATATTTGACAGCATCCATATGGCCAACATATGACGCAAGTGAGGTAGTAAATTGCCACTTTGAAAAACAATTTGTGGACTTGATAAACTTAATAACACACACAGTTAGCATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTGAGGCAGGGTTTCTCTGTATCATCTTTTTTTAAAAAAATTTTATTTGTTCTTGAGTATTTTCATCTCTGGAGTTATAGACAGTTGTGAGCTGCCGTGTGGGTGCTGGGGACTAAACCCAGGTCCTCTAGAAGAACATGGAAGAGCAGAGCTTTGTGAGTTCGAGGCCAGCCTGATCTACATAGTAGTAGTAATAATAATACTTAAGCATTTACCCTTTTGTTTCTGAATTAAATATAAAATCATTTTGTACATGGAGATTACAAAAAATGGTCACAATTGGTGTAATTTCTAGACAGGCCAGGAAGTGCTGACAGATGGGGTGCTAGTTGTATTTCTCTTCATGAAAACCTAGAGTCTATTTGTTGACATCTCATATATTGCTCCATAAGTAGATTTTGAGAAATTAAAAAATTATGTGCTTTGTAACACTCAAGCCAAACTATCCTATCTGACTTTTCTATACAG
Seq C2 exon
ATAATGGACTGCCCAAACCAGAACTAATATCCTGGATGGAACTTGGGAGAGAGAACTTCGGCAGCTGGGGAGAAGGACAGAAAGTAGACAGAGGAATTCGCTGTTCTGTAGATGATGTGTGTGTTCATCGAGTCACTGAGGAACAGTTACCCGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006925:ENSRNOT00000038550:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.038
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]