MmuINT0179873 @ mm10
Intron Retention
Gene
ENSMUSG00000051499 | Zfp786
Description
zinc finger protein 786 [Source:MGI Symbol;Acc:MGI:3026883]
Coordinates
chr6:47825041-47827088:-
Coord C1 exon
chr6:47826962-47827088
Coord A exon
chr6:47825197-47826961
Coord C2 exon
chr6:47825041-47825196
Length
1765 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGG
5' ss Score
9.31
3' ss Seq
TGTCTGACTCTTCTGTACAGATA
3' ss Score
8.15
Exon sequences
Seq C1 exon
TTCCCACTGACTTTTGAAGATGTAGCCATTTACTTCTCTGAGCAAGAGTGGCAACACTTAGAGGCCTGGCAGAAGGAACTTTACAAGCAAGTCATGAGAACCAATTACGAGACTCTCATCTCTCTAG
Seq A exon
GTAAGGAGCTTTCAACTTCTCTGGTGATTCTTGCAACTGGATCTTCTCAGAGCCCCTTGGTCACTTGATACACCTGTTAGGTAGCAAGATTGCTTAGATATAACCCAGAAAGGCTTTTTCATCTCTTTATTGTTGTTGTTAATACTAATGTATACATCACCGGTTTGTCCTTAGAGGTGGACCTTACAGGGAAGTATTTAAGACAGCATGTAGTATCATAGTCAGAGGTAGCAAGGATGAATGTTAAAACTTTCCCCATCACACTTTACTCTGAGATTGCCTGATTTTTCCACTGAGAAGCACACCTGCCTGTGCCCATAAAGTACCTGTATGCCTTAACCTAGAAAGTGGCTTCTCTGCAGCTTTCCAGTGGGGTTAAAGATTGCAAGAAACGAATGGTCTTCCCTGGAGTGTGATTCTGCAAGAGTGTACCTTGAGGTGTTTTGAGAGTACCTGACTCTGGTTAGGATAATGGATTTTTTTCCCTTCTTTCTTCTCCTTTTTCCTTCTCCTCCTCCTCCTTCTTACTCCTCTTCCTTCTTGTCCTCCTCTTCCTCTTCCTCCTCCTCCTTCATCCCTCCTTTTCTTGTGTGTGATTCTGGAGATGACACCCAGGTCGTTGCATGTGCCACCCAAGGGCTGTCTCACTGACATACACTTACAGCCCCTTTAAAGTTCTTGTTTATTGGATTTTTCTGTTGCTGTTTATTGTTTTTTTGAGACGAGGTCTCACTGTATAACTGAAGCTGTCTTGGAACTCACTATATAGACCAACCTGGCTTTGATCTCACAAAGATCTGCTTGTCTTGAGTGCTGTGGTTAAAGGTATGGACCAACCAGCCGGTTGGGTGGTGGTGCCCTCTGGTAGAATATACTGATGAGGCAGAGGTAGGAGGATTATGACTTTGAGACTAGCCTGTGCTACACATCTACACATTTGTGGGGCATAGTGGTGCACACTTTTTAGTCCTAGAACTTGGGATCCAGAGGCAAGTGGATCCCTTGAGTTTCAGGCCAGCCTGGTCTCCATAGAGAATTCCAGGACATGTAAGGCTACAAAGAGACCCTGCCTGAAAAAGGGTGTTCACCCTTACACCTGACTAGTTTTTCTTAGCCATCAAATGAATTTTTAAAATGAATCTGGAGCTGGAGAGATGACTCAGTAGGTGAGAGGTCAAGCCTTGCCAGCATGATATCCTGAGTTTGCACACCCAGAGTACACATAAGATATGTGTGCAGCGGCTCACATCTGTTATGTAATAACCATTGATGGGCAAGGTCAAAGGTCAAGACAGGTGGGTCTCTGGAAGAGCCTGACCTCCATGGCAAAGACCTCATGGCAATGACAGATCCTGTCACAAAATTTAAAAGATGGAGGGTGTCCTGAGAACCAATATCCGCGGCTGTTCCTTGACTTCCATATGCATGACACGTAATCCCTCCCAGCACACACATGAAAAAGCATGCATAAAAACGAGCCTGTTAGGAGAAGCGTAAAATGAATGGCTCCAGTTTGATTCTGGGTTTTTTTTTTTTTAATTTATGTGTATAAATGTTTTGGTGTATGTATGTCTGTGAACCATATGTGTACCTGGAACCCAGGGAGGCAAGAAGAGAGTGTTATATCCCCTGCAACTGTAGTTACAAGTGGTTGTGAGCCACTGGATGGATACTGGGGATTAATCTGTCATCCTCTGGAAAAATTTTAGAATGATATACTTTATAACACTCAAGCCAAATTACCCTGTCTGACTCTTCTGTACAG
Seq C2 exon
ATAATGGACTGCCCAAACCAGAACTAATATCCTGGATTGAACTTGGGAGAGAGCTCTTCGGCAGCTGGGGAGAAAAAAAGAAACCAGACAAAGAAACTCACTGCTCTATAGATGATGTGCATGTTCATCTAGCCATTGAGGAACAGTTACTTGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000051499:ENSMUST00000058844:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.057
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCACTGACTTTTGAAGATGTAGC
R:
TCAAGTAACTGTTCCTCAATGGCT
Band lengths:
280-2045
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types