HsaINT0188318 @ hg19
Intron Retention
Gene
ENSG00000169951 | ZNF764
Description
zinc finger protein 764 [Source:HGNC Symbol;Acc:28200]
Coordinates
chr16:30569054-30569642:-
Coord C1 exon
chr16:30569308-30569642
Coord A exon
chr16:30569168-30569307
Coord C2 exon
chr16:30569054-30569167
Length
140 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGA
5' ss Score
8.51
3' ss Seq
TTTGCGTTCTTCTTCCCTAGGAA
3' ss Score
12.56
Exon sequences
Seq C1 exon
GTGCGCCCTCGGGGGCCCTAGTAACCTCCCTCCTTCCCTTGGGCCCGGGCCGGGGAGGCTTTCTCGGGCGCAGGAGGTTCCGCAGGCCCAGGCCAGGCCAGGGGAGGCAGCCGATCCGTCGTCGGGGTTGACAGTTACCATGGCGCCGCCTCTGGCCCCGCTCCCTCCCCGGGACCCAAACGGGGCCGGACCCGAGTGGAGGGAGCCGGGGGCTGTGAGCTTCGCGGACGTGGCCGTGTACTTCTGCCGGGAGGAGTGGGGCTGCTTGCGGCCAGCGCAGAGGGCCCTGTACCGGGACGTGATGCGGGAGACCTACGGCCACCTGAGCGCTCTCG
Seq A exon
GTGAGAGCCCCACCTGCTCGCCTGAGCCCTGCGCCCCCACAGGCCCTGCCGCGCCTCTGGGAGCTGCGCGTGAAGTTGGGGGCCCCGGGGCCGGGCAGGTGGCCTCCCCGCAGCGTGGGGTTTGCGTTCTTCTTCCCTAG
Seq C2 exon
GAATCGGAGGCAACAAGCCAGCTCTCATCTCCTGGGTGGAGGAGGAGGCCGAACTGTGGGGTCCGGCTGCCCAGGATCCGGAGGTGGCGAAATGTCAGACACAAACGGACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169951-ZNF764:NM_001172679:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.379 A=NA C2=0.526
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=62.1)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGGTTGACAGTTACCATGG
R:
AGATGAGAGCTGGCTTGTTGC
Band lengths:
243-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)