MmuINT0180008 @ mm9
Intron Retention
Gene
ENSMUSG00000071285 | Zfp87
Description
zinc finger protein 87 [Source:MGI Symbol;Acc:MGI:107768]
Coordinates
chr13:67616718-67621657:-
Coord C1 exon
chr13:67621562-67621657
Coord A exon
chr13:67619049-67621561
Coord C2 exon
chr13:67616718-67619048
Length
2513 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
TCTCAGCTTTTCCTCACCAGGGG
3' ss Score
7.98
Exon sequences
Seq C1 exon
GTCTTGCATCCTGTAAGCCATACCTGGTCACATTTCTGGAGCAAAGACAAGAGCCTTCAGTTGTGAAGAGACCAGCAGCTGCCACCGTGCACCCAG
Seq A exon
GTGTGTAGGAATTGCAGGGTCAGAGGGTAGAATGGGAGATTAGAGATCCAACAGAAAGCCAGGCTTTCTCCCAAGATAACCTGCTCTGGTGGACGTCGTATGTCAAGATCTCCTTTTATGCCCTTTACTGTCACAGAAGGACATCTGCCAGGTCTCTATGGTACTTTAAGTCTCTAAGCTTGGTTGGCCCCCTTCAGTGAGCTCTGCTTATGTTTGCCATGAGTCGAGAGAGTTCTTCACTTTGCTGAGTCTACATTGTCGCTGACTTTTTACTGTTGCCTACACTTCTGGAAATTCCCACACATTTCTAAAGATCTATAAGTGCAGTAACTTTAAACTCTTCCGTGTCATGTACATCCTTGTAAATTGCACATTTTTCACCAAGCTATGAATGCTTGTGCTATATTCTAATCACTTTTTTTCTACAACATACTCAGTGGTGATTTAAAATACATTCCTTTTGTGGCTAAAACATCCTAAGCCAAAATTGCACATCTAGAAGCATATTTTTTAATAGATCGCCGGAGTAGGTCTTCAGAATTTTGTGGATTCATGAATCCCTTTCTTATTTTACAGTTCTATGTACTGCATTCCTATTTTGCACTCTAGGTTGCCTGAAATTATTTTCACACATGCAACCTACATATTTTTGTGAATGTCCAATAATAAACCCTTCAGGACAATGTAAGATTTTTTTTTAAATTTAATTAATTAATTATTTTACACTCCATATTTTATCACCTCCCCATGTCCACCTCTGACTGTTCCACATCCCACATCTCTTCCCCCTCCCCCGACTCTCCCCACACTCCCCACCTCCATCTCCACTAGGATGTCCCCACCCCCAACCCCCCACCCAACCAGATCTATAAACTCCCTGGTGCCTCCAGTCTCTTGAGGGTTAGGTGCATCTTCTCTGACTGAACCCAGACCTGGCAGTCCTCTGCTGTATGTGTGTTGGGGGCCTCACATCAGCTGGTGTATGCTGCCTGGTTAGTGGTCCAGTGTCTGAGAGATCTTGAGGGTTCAGATTAATTGAGACTGCTGGTCCTCCTACAGGGTTGCCCTCCTCCTCAGCTTCCTCCAGGTCTTCCCCAGTTCAGCCACAGGGGTGAGCAGCTTCTGTCCATTGGTTGGGTGTAAATAACTGCATCTGACTCTTTCAGCTGCTTGTTGGGTCCCTCGGAGGGCAGTCATGCTAGGTCCCTTTTTGTGAGCACTCCATAGCCTCAGTAACAGTGTCAGGCCTTGGGGCCTCCCCTTGAGCTAGATCCCACTTTGGGCGGTCACTGGATCTTCTTTCCCTCCTGCTGCTCTCCATTTCCATCCCTGTTGTTCTTTGAGACAGGAACAAAGATGGGTCAGAGTTTTGACTGTGAGAAAGATTTTTTTTTTTTTTTTACAGAAATGTATGAGCTTTAGTTCTGAACATCAGGACTGTATGTCCTTTATAAGCAAATGTGAGTCTCATAGTTCATGTCTTACATATCTTGTTATTCAATTGTTTATCTCATGAATGAGTATTCTTATAAATAGGCTAACTTTATGATACACTCATTGACAGAAATGTTGCCTTTAGAAAAACTCTATCCTTTATACATGAACTTGAAAGTTTCTCATAAGTCTGTATTTTCCAGGAGTCTTATTTTCTTGTTATGAAAATGTAATACAAAATACTGTCTTCAACTCTTGAAACGAGTTATGAAGCAAATATTTTCAAACCTCCAAAACTGAAACTCTATTCTTAATATAAATCTATGTATCTCTACATCCATTTAATTTAAGGCAAATAAAGTTAACTCCCAGATATCCAGGTTTGGCTCCTGAATAAGCAAGTCTTTCGGTGGATCCTGTATTTGATTACTTGGTTTCCATTTGGTGGTCTCCCTTGCTGCAGGCAGCACACAACTGGGGTCAGGCTTTCAGAGTTCAAATCCTGCCTGCACTGTTTGTTTGGTTCTCTGCTTCACGGTTTGCATTCACAAAACGAGCCTCAGCTTCTGCTCTAGCCATCACTCCTGCTCATAGCTTTCATTCGGTCCTCCATGATGGATTCAGAACGTTTTGGAACCATAAGCCTAACTTAAGTCTTTCTTCTGTAAATTGCTTTAGTCATGATATTTTACCACAGCAACAGAAAAGTACCCAATTTAGATATATTTTACTTTTTATCTATGTCTGATGATCAGACAGTTTGTCTAGTGGGCTTATTTCTGTTAGCATAAGAGTTTCTGTTATTTTTGATGGTATTATTGATCTCTTAGCCATTTAACTTTGGATATGGCTTCAGTGTTTCTATATTCTACTTTTGTCTTCACCTTTCAGTAGAAGTTTATGTTATTTCGATCTACAGTATTTTCTGAATTTCACTACAGTTAGTATAGGTATGGAAATATATTGTAGTTTCCCATTTGTCTATAAAAATATGAGTAACTCCTCATATTAAAGATAAGCATTGTAAACATGAAGAATGTCGCTTGGAGCTCATTCATATCTCAGCTTTTCCTCACCAG
Seq C2 exon
GGGGGAAGCCCTATAAATGTCAAGAATTTGACAAGACCTTTGATTGGAACTCACTCCTTCTTCAGCGCCAGAGAGTTCATCCTGTGGAGAAGCCCTACAAATGTGAAGAATGTGGGAAGGTCTTTAGTGCTCACTCGGCACTTTCTATTCACCAGCGAATCCACACCGGAGAGAAACCCTACAAGTGTGAAGAGTGTGGCAAGGCCTTCAGTACTCGCTCAGCACTTTATATACACAAGAAAATCCACTCTGGAGACAAACCCTACAAGTGTGAGGAGTGTGCCAAAGCCTTTTATTTCCCTTCATTGCTTAAGCAACATCAACGAACTCATTCTGCAGAGAATCTCTGCAAGTGTGAGGAGTGTGGCAAAGCCTTTTATTTACCTTCATTCCTTAAGCAACATCAAAGAATTCATTCTGCAGAGAATCCTTACAGGTGTGAAGAATGTGGGAAAGCCTTTTCCTATCCCTCAACCCTAAAGCAGCATCAAAGAATTCATTCTGGAGAGAAACCATACCGTTGTGAAGAATGTGGCAAAGCCTTCCGTAGGTCAACATACTTTCACCAACACCAAAGAATTCATACTGGAGAGAAACCCTACCAGTGTGAAGAGTGTGGGAAAACATTCTACTATCGTTCAAACCTGAAGGGACATCAGATTATTCATTCTGGAGTGAAACCCTACAAGTGTGAAGTATGTGGGAGCATGTTTAGAACTAGCTCAGACCTTTCTAAGCACCAGAGGATCCATGCGGAAGTGAAGCTGTACAGTTGTGAGGAGTGCGGGAAAGCCTTTTCTACTCATTCGTACCTCATTCGGCACAAATTGGGCCACTCTAGAGAGAAACCATACAAATGCGAAGAGTGTGGCAAAACATTTTGTTATCCTTCAATCCTTAAGGAACATCAACGAATTCATTCTGGAGTGAAACCTTACAATTGTGAAATATGTGGCAGCATGTTTAGAACTCGCTCCGAACTTTCTAAGCACCAGAGAATCCATGCTGAAGTGAAGCTCTACAACTGTGAGGAGTGCGGGAAAGCCTTTTCTACTCACTCCTACCTTATGAGGCATAGACTTGGTCACTCTGGAGAGAAGCCCTACAAATGTGAAGAGTGTGGGAAATCCTATAGCTACCCTTCACTCCTTAAGGAACATCAAAGAATTCATTCTCAGAATCCCTATAAGTGTGACGTGTGTGGGAAGGTTTTTTGTACTCGCTCAGGACGTTCTAAACACCAGAGAATTCACACCGGAGAGAAACCTTACAAGTGTGAAGACTGTGGGAAGGGATTCTCGACTCACTCATACCTTACTCTGCACAAATTACTTCATACCGGAGAGAAACCTTTCAAATGGGAAGAATGTGGTGAGGTTTTCTATACCTGCTGAAGACTTACTAAACATCAGGAAATTCACATTGGCGAAAACCCTACAAAGGTAAAGAATGTGTCAAAACTCTTTACTGTACTTCAGACTTTAAATAATACCATAAAAACTCATACTGAAGAGAAACCATACTTTAATTAGGGCTTCGTTAGATACAAGGTACGTCCTACTGTAGAGAAACTTTACAGATGTGGAGAATGTGGACAAATATTTTACCGTACTTCACAACTTTAACAGCCAGCAAAAGGGCTCATTCTCAGAAGAATCCCTTCAAGTGTGAAGTATGGGACAAGGTATTATGTGCTACCTTGAGCTTTCTGTCTACCAGAACATGTATCCTGGAGAGAAACTCTGCAAGTGTGAAAAATTTGGAAAGTTTTTTAACTCATTCCTCCCTGATTCTGATCAGACTTGGCAAAGTTTGGGGCGGGCGTTGTGTTTTTGTTTTAGGATAATTGTGCTCAGGCCTGTTGATTGTGGGAGGAACCAACCCATCTCTGTTGAGCAAGGATCCTGGATTGTATAAAAGGAGAAAGGGAACTGAGAAGAAGCGCTCCTCTCTCTTCCTCTGCCCTCTGACTGTCGAGGCAATAGGAACTTCTCTTTCAGCTCCCGCTGCCCTAAAATGTCTCACGACGTTCACAGGGTCGTGATTCGAATGAGAAATGTTAACCCTGTAGTCTTAAGCATTTGAACATTTGTGCCCCGAGTTGTTGGCTCTATTTGGAGAGATTTAGAAGTAGGTCACTAGAGGTGAACTTTGTGAATAAAGAGCTCCCTCTACATCCAGTTCTCTCACTCTGCTTCCTGAGTACCATTGAGGATGTGAACTCTCAGCTTCCGGCTTCGGCCACCATGCAGCTTATTCCCATGCCCACCCTCTGTCGTGAACTTCGATCCCTTCTGTACCGCAAACTGAAGTAAAGTCATTCCTCCATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000071285-Zfp87:NM_133228:3
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.045 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.6),PF097235=Zn-ribbon_8=WD(100=9.2),PF134651=zf-H2C2_2=WD(100=5.2),PF0009621=zf-C2H2=WD(100=4.9),PF0009621=zf-C2H2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: