MmuINT0180008 @ mm10
Intron Retention
Gene
ENSMUSG00000097333 | Zfp87
Description
zinc finger protein 87 [Source:MGI Symbol;Acc:MGI:107768]
Coordinates
chr13:67515781-67520721:-
Coord C1 exon
chr13:67520626-67520721
Coord A exon
chr13:67518113-67520625
Coord C2 exon
chr13:67515781-67518112
Length
2513 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
TCTCAGCTTTTCCTCACCAGGGG
3' ss Score
7.98
Exon sequences
Seq C1 exon
GTCTTGCATCCTGTAAGCCATACCTGGTCACATTTCTGGAGCAAAGACAAGAGCCTTCAGTTGTGAAGAGACCAGCAGCTGCCACCGTGCACCCAG
Seq A exon
GTGTGTAGGAATTGCAGGGTCAGAGGGTAGAATGGGAGATTAGAGATCCAACAGAAAGCCAGGCTTTCTCCCAAGATAACCTGCTCTGGTGGACGTCGTATGTCAAGATCTCCTTTTATGCCCTTTACTGTCACAGAAGGACATCTGCCAGGTCTCTATGGTACTTTAAGTCTCTAAGCTTGGTTGGCCCCCTTCAGTGAGCTCTGCTTATGTTTGCCATGAGTCGAGAGAGTTCTTCACTTTGCTGAGTCTACATTGTCGCTGACTTTTTACTGTTGCCTACACTTCTGGAAATTCCCACACATTTCTAAAGATCTATAAGTGCAGTAACTTTAAACTCTTCCGTGTCATGTACATCCTTGTAAATTGCACATTTTTCACCAAGCTATGAATGCTTGTGCTATATTCTAATCACTTTTTTTCTACAACATACTCAGTGGTGATTTAAAATACATTCCTTTTGTGGCTAAAACATCCTAAGCCAAAATTGCACATCTAGAAGCATATTTTTTAATAGATCGCCGGAGTAGGTCTTCAGAATTTTGTGGATTCATGAATCCCTTTCTTATTTTACAGTTCTATGTACTGCATTCCTATTTTGCACTCTAGGTTGCCTGAAATTATTTTCACACATGCAACCTACATATTTTTGTGAATGTCCAATAATAAACCCTTCAGGACAATGTAAGATTTTTTTTTAAATTTAATTAATTAATTATTTTACACTCCATATTTTATCACCTCCCCATGTCCACCTCTGACTGTTCCACATCCCACATCTCTTCCCCCTCCCCCGACTCTCCCCACACTCCCCACCTCCATCTCCACTAGGATGTCCCCACCCCCAACCCCCCACCCAACCAGATCTATAAACTCCCTGGTGCCTCCAGTCTCTTGAGGGTTAGGTGCATCTTCTCTGACTGAACCCAGACCTGGCAGTCCTCTGCTGTATGTGTGTTGGGGGCCTCACATCAGCTGGTGTATGCTGCCTGGTTAGTGGTCCAGTGTCTGAGAGATCTTGAGGGTTCAGATTAATTGAGACTGCTGGTCCTCCTACAGGGTTGCCCTCCTCCTCAGCTTCCTCCAGGTCTTCCCCAGTTCAGCCACAGGGGTGAGCAGCTTCTGTCCATTGGTTGGGTGTAAATAACTGCATCTGACTCTTTCAGCTGCTTGTTGGGTCCCTCGGAGGGCAGTCATGCTAGGTCCCTTTTTGTGAGCACTCCATAGCCTCAGTAACAGTGTCAGGCCTTGGGGCCTCCCCTTGAGCTAGATCCCACTTTGGGCGGTCACTGGATCTTCTTTCCCTCCTGCTGCTCTCCATTTCCATCCCTGTTGTTCTTTGAGACAGGAACAAAGATGGGTCAGAGTTTTGACTGTGAGAAAGATTTTTTTTTTTTTTTTACAGAAATGTATGAGCTTTAGTTCTGAACATCAGGACTGTATGTCCTTTATAAGCAAATGTGAGTCTCATAGTTCATGTCTTACATATCTTGTTATTCAATTGTTTATCTCATGAATGAGTATTCTTATAAATAGGCTAACTTTATGATACACTCATTGACAGAAATGTTGCCTTTAGAAAAACTCTATCCTTTATACATGAACTTGAAAGTTTCTCATAAGTCTGTATTTTCCAGGAGTCTTATTTTCTTGTTATGAAAATGTAATACAAAATACTGTCTTCAACTCTTGAAACGAGTTATGAAGCAAATATTTTCAAACCTCCAAAACTGAAACTCTATTCTTAATATAAATCTATGTATCTCTACATCCATTTAATTTAAGGCAAATAAAGTTAACTCCCAGATATCCAGGTTTGGCTCCTGAATAAGCAAGTCTTTCGGTGGATCCTGTATTTGATTACTTGGTTTCCATTTGGTGGTCTCCCTTGCTGCAGGCAGCACACAACTGGGGTCAGGCTTTCAGAGTTCAAATCCTGCCTGCACTGTTTGTTTGGTTCTCTGCTTCACGGTTTGCATTCACAAAACGAGCCTCAGCTTCTGCTCTAGCCATCACTCCTGCTCATAGCTTTCATTCGGTCCTCCATGATGGATTCAGAACGTTTTGGAACCATAAGCCTAACTTAAGTCTTTCTTCTGTAAATTGCTTTAGTCATGATATTTTACCACAGCAACAGAAAAGTACCCAATTTAGATATATTTTACTTTTTATCTATGTCTGATGATCAGACAGTTTGTCTAGTGGGCTTATTTCTGTTAGCATAAGAGTTTCTGTTATTTTTGATGGTATTATTGATCTCTTAGCCATTTAACTTTGGATATGGCTTCAGTGTTTCTATATTCTACTTTTGTCTTCACCTTTCAGTAGAAGTTTATGTTATTTCGATCTACAGTATTTTCTGAATTTCACTACAGTTAGTATAGGTATGGAAATATATTGTAGTTTCCCATTTGTCTATAAAAATATGAGTAACTCCTCATATTAAAGATAAGCATTGTAAACATGAAGAATGTCGCTTGGAGCTCATTCATATCTCAGCTTTTCCTCACCAG
Seq C2 exon
GGGGGAAGCCCTATAAATGTCAAGAATTTGACAAGACCTTTGATTGGAACTCACTCCTTCTTCAGCGCCAGAGAGTTCATCCTGTGGAGAAGCCCTACAAATGTGAAGAATGTGGGAAGGTCTTTAGTGCTCACTCGGCACTTTCTATTCACCAGCGAATCCACACCGGAGAGAAACCCTACAAGTGTGAAGAGTGTGGCAAGGCCTTCAGTACTCGCTCAGCACTTTATATACACAAGAAAATCCACTCTGGAGACAAACCCTACAAGTGTGAGGAGTGTGCCAAAGCCTTTTATTTCCCTTCATTGCTTAAGCAACATCAACGAACTCATTCTGCAGAGAATCTCTGCAAGTGTGAGGAGTGTGGCAAAGCCTTTTATTTACCTTCATTCCTTAAGCAACATCAAAGAATTCATTCTGCAGAGAATCCTTACAGGTGTGAAGAATGTGGGAAAGCCTTTTCCTATCCCTCAACCCTAAAGCAGCATCAAAGAATTCATTCTGGAGAGAAACCATACCGTTGTGAAGAATGTGGCAAAGCCTTCCGTAGGTCAACATACTTTCACCAACACCAAAGAATTCATACTGGAGAGAAACCCTACCAGTGTGAAGAGTGTGGGAAAACATTCTACTATCGTTCAAACCTGAAGGGACATCAGATTATTCATTCTGGAGTGAAACCCTACAAGTGTGAAGTATGTGGGAGCATGTTTAGAACTAGCTCAGACCTTTCTAAGCACCAGAGGATCCATGCGGAAGTGAAGCTGTACAGTTGTGAGGAGTGCGGGAAAGCCTTTTCTACTCATTCGTACCTCATTCGGCACAAATTGGGCCACTCTAGAGAGAAACCATACAAATGCGAAGAGTGTGGCAAAACATTTTGTTATCCTTCAATCCTTAAGGAACATCAACGAATTCATTCTGGAGTGAAACCTTACAATTGTGAAATATGTGGCAGCATGTTTAGAACTCGCTCCGAACTTTCTAAGCACCAGAGAATCCATGCTGAAGTGAAGCTCTACAACTGTGAGGAGTGCGGGAAAGCCTTTTCTACTCACTCCTACCTTATGAGGCATAGACTTGGTCACTCTGGAGAGAAGCCCTACAAATGTGAAGAGTGTGGGAAATCCTATAGCTACCCTTCACTCCTTAAGGAACATCAAAGAATTCATTCTCAGAATCCCTATAAGTGTGACGTGTGTGGGAAGGTTTTTTGTACTCGCTCAGGACGTTCTAAACACCAGAGAATTCACACCGGAGAGAAACCTTACAAGTGTGAAGACTGTGGGAAGGGATTCTCGACTCACTCATACCTTACTCTGCACAAATTACTTCATACCGGAGAGAAACCTTTCAAATGGGAAGAATGTGGTGAGGTTTTCTATACCTGCTGAAGACTTACTAAACATCAGGAAATTCACATTGGCGAAAACCCTACAAAGGTAAAGAATGTGTCAAAACTCTTTACTGTACTTCAGACTTTAAATAATACCATAAAAACTCATACTGAAGAGAAACCATACTTTAATTAGGGCTTCGTTAGATACAAGGTACGTCCTACTGTAGAGAAACTTTACAGATGTGGAGAATGTGGACAAATATTTTACCGTACTTCACAACTTTAACAGCCAGCAAAAGGGCTCATTCTCAGAAGAATCCCTTCAAGTGTGAAGTATGGGACAAGGTATTATGTGCTACCTTGAGCTTTCTGTCTACCAGAACATGTATCCTGGAGAGAAACTCTGCAAGTGTGAAAAATTTGGAAAGTTTTTTAACTCATTCCTCCCTGATTCTGATCAGACTTGGCAAAGTTTGGGGCGGGCGTTGTGTTTTTGTTTTAGGATAATTGTGCTCAGGCCTGTTGATTGTGGGAGGAACCAACCCATCTCTGTTGAGCAAGGATCCTGGATTGTATAAAAGGAGAAAGGGAACTGAGAAGAAGCGCTCCTCTCTCTTCCTCTGCCCTCTGACTGTCGAGGCAATAGGAACTTCTCTTTCAGCTCCCGCTGCCCTAAAATGTCTCACGACGTTCACAGGGTCGTGATTCGAATGAGAAATGTTAACCCTGTAGTCTTAAGCATTTGAACATTTGTGCCCCGAGTTGTTGGCTCTATTTGGAGAGATTTAGAAGTAGGTCACTAGAGGTGAACTTTGTGAATAAAGAGCTCCCTCTACATCCAGTTCTCTCACTCTGCTTCCTGAGTACCATTGAGGATGTGAACTCTCAGCTTCCGGCTTCGGCCACCATGCAGCTTATTCCCATGCCCACCCTCTGTCGTGAACTTCGATCCCTTCTGTACCGCAAACTGAAGTAAAGTCATTCCTCCATAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000097333:ENSMUST00000181767:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.2),PF0009621=zf-C2H2=WD(100=4.9),PF0009621=zf-C2H2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types