GgaEX1065532 @ galGal4
Exon Skipping
Gene
ENSGALG00000022619 | ZNF541
Description
zinc finger protein 541 [Source:HGNC Symbol;Acc:HGNC:25294]
Coordinates
AADN03017309.1:3718-4910:-
Coord C1 exon
AADN03017309.1:4751-4910
Coord A exon
AADN03017309.1:4503-4616
Coord C2 exon
AADN03017309.1:3718-4042
Length
114 bp
Sequences
Splice sites
3' ss Seq
GGTCCCTCCGTGCTGCTCAGGGC
3' ss Score
5.57
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
TGCTACGAGCAGCGCTGCTCCCACCAACAGCAGCGACTGCGACGGCGTTTTTCTATGCAAGAACTGCCACCAGGTGTTCTACACCCAGAAGGGCCTGGGCAGCCACATGTGCTTCCGTGACGAGCAGTGGCTGCTGCCCCAGAGGAGAGAGGAGCCGCAG
Seq A exon
GGCTGTGCTGCAGAGGACGGATCCGCTGCGAGGCCGGAGCTGCAGGAGGAGCCCTGCGAGGCCGGGGCTGCGCTGCTCATCCCCGTCTCAGTGCCAGTGCTGCCTGGGGGTGAG
Seq C2 exon
GTGACCCCCAAGGAGAGCCAGGATGGGAAGAGCCCTCAGCTCAGCTCGCACCCGAAGAAGAGGAAGCGGCAGATTCTCCCCAAACCCCTCTTCATCCCCCCCCCGCCGCCCCCCGAGGCGCAGCCGGGCCCTGGGGGCTGCTACCGCAGCAACCTGCGCTCCCCGGTGCTGCTGATGGACCGCCTGCTGCGGGACCTGCTGCAGTGCTCGCCCTACACCCCCCCGCCCATGCTCAGCCCCGTCCGCGAGGGCTCGGGGCTCTACTTCAACGCCGTCTGCTCATCCACTGCTGCAGAGCCTTGTCGGCTCTTGGGCAGCGTGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022619_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.315 A=0.500 C2=0.440
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTGCTCCCACCAACAG
R:
TGAAGAGGGGTTTGGGGAGAA
Band lengths:
242-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]