GgaINT1030615 @ galGal4
Intron Retention
Gene
ENSGALG00000022619 | ZNF541
Description
zinc finger protein 541 [Source:HGNC Symbol;Acc:HGNC:25294]
Coordinates
AADN03017309.1:4503-4910:-
Coord C1 exon
AADN03017309.1:4751-4910
Coord A exon
AADN03017309.1:4617-4750
Coord C2 exon
AADN03017309.1:4503-4616
Length
134 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAAG
5' ss Score
6.66
3' ss Seq
GGTCCCTCCGTGCTGCTCAGGGC
3' ss Score
5.57
Exon sequences
Seq C1 exon
TGCTACGAGCAGCGCTGCTCCCACCAACAGCAGCGACTGCGACGGCGTTTTTCTATGCAAGAACTGCCACCAGGTGTTCTACACCCAGAAGGGCCTGGGCAGCCACATGTGCTTCCGTGACGAGCAGTGGCTGCTGCCCCAGAGGAGAGAGGAGCCGCAG
Seq A exon
GTGAAGGGAAAGCAGAGGGGTCGGGGCGCTCAGAAAGCAAAGGTGGGGGGCAGGGATGGGAGCGGAGCCGTCCCGAATCCCAGCGCCCTCCCCCAGAGCGCTGTGTGACCGCCGGGTCCCTCCGTGCTGCTCAG
Seq C2 exon
GGCTGTGCTGCAGAGGACGGATCCGCTGCGAGGCCGGAGCTGCAGGAGGAGCCCTGCGAGGCCGGGGCTGCGCTGCTCATCCCCGTCTCAGTGCCAGTGCTGCCTGGGGGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022619:ENSGALT00000036197:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.315 A=NA C2=0.500
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCAACAGCAGCGACTG
R:
CAGCACTGGCACTGAGACG
Band lengths:
242-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]