GgaEX1065920 @ galGal4
Exon Skipping
Gene
ENSGALG00000003594 | chAnk1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NJR5]
Coordinates
chr22:2615184-2617751:-
Coord C1 exon
chr22:2617199-2617751
Coord A exon
chr22:2616359-2616617
Coord C2 exon
chr22:2615184-2615267
Length
259 bp
Sequences
Splice sites
3' ss Seq
TGTCCCTCTCCGGTGCCCAGGCT
3' ss Score
6.79
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
CTGCCATCCCCTCTGCGTGCTGACCAGTACTGGAACGAGGTGGCCATCATGGACGCCATCCCCATGGCCGCCACTGAGCAGGACGCCCTGATGGAGATGTCTGACATGCAGGTGTGGTCCTCAGGGCTCACCCCTTCACTGGTGACGGCTGAGGACTCCTCTCTGGAGTGCAGCAAGGCTGAGGACTCGGATGCTACAAGCGAAGGTCGTTTCCCAGGGCACCTTCTGACAGATGCACATGTCCCAGACCACATGGGCTCTATGGACTTAGTTGAGGATGACACAGTGGACTCAGACGCCATGAACGGGCTGATTGAACTGCTAGAGCAGGAGGAGGGGCAGAGGCCAGAGGGGAAGATGCCAGCCAGCGACCACCAGCTAGGGACTGGAGAGCAGAACCCAGAGAGTGAAGTCTCTTTTGTTTCAGTTCAACAGAAGGTACAAGCCACGATCGTGCCATCGCCAACCGTGAGCCACACAGTGGAGAGGAGTGCAGACAG
Seq A exon
GCTGAGGGACTGGAATGCAGAAGGCTCCTTTATCTCCTGCCTACAGGACCTGACAGAGGGCTCCTGGCAGGAGGGGGTCACCCGACGGCTGGGTCCAGCACACACCGTGGCTGCTGGGGCGCAGGGCCAGGAGCAAGAGCAGGTCCTGGCGCCGGACGTGGAGCTGATGCGGGTCAGCTCCACAGAGGACAGCGACTGGCAGCCCCAGCACCCCGCGGGCGGCTGGCCAGAGGAGCCTGACAGCCGCTGCTTTGGGCAG
Seq C2 exon
GGCAACGAAGTCCTCCATCTCCCTGGGGAGCATGTGACTGAGGAGCAGTTCACAGATGAACAAGGCAATATAATCACCAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003594_MULTIEX3-5/5=4-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.638 A=0.569 C2=0.193
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGATGCACATGTCCCAGACC
R:
CAGGGAGATGGAGGACTTCGT
Band lengths:
296-555
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]