RnoEX6055951 @ rn6
Exon Skipping
Gene
ENSRNOG00000018241 | Ank1
Description
ankyrin 1 [Source:RGD Symbol;Acc:1309620]
Coordinates
chr16:73682797-73690072:-
Coord C1 exon
chr16:73690000-73690072
Coord A exon
chr16:73687146-73687422
Coord C2 exon
chr16:73682797-73682880
Length
277 bp
Sequences
Splice sites
3' ss Seq
TCACCTGTCCCGGACCCCAGAAC
3' ss Score
6.83
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GCCAGCAGCGAGTTCACGCCCGAATCACAGACTCACCCTCAGTGAGGCAGGTGCTGGACAGAAGCCAGGCCAG
Seq A exon
AACAGTGGACTGGTATAAACAGGGTTCAGCAGCATCATATCCACAAGAGGCCGCACAAAGTTCCTGGCAAGAGGAGGTCACGCAAGGCCCACAGTCATTCCAGAGAAGGATCACCACCATCCAAGGGCCGGAGCCCGGCACACTTCAGGAATATGAGCAGGTGGTGGTGTCCACCAGGGAGCATGTGCAGAGGGGGCCACCTGAGAGCGACAGCCCCAAGGCCGGGAAGGACCCAAGTCTGTGGGCATCGGAGAGTGCCTTCTCTCAAGAGGTGCAG
Seq C2 exon
GGGGATGAGCTTCAGAATATTCCAGGAGAGCAGGTGACAGAGGAACAATTCACAGACGAACAGGGCAACATTGTCACCAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018241-'58-63,'58-57,61-63=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.880 A=0.961 C2=0.738
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGCAGCGAGTTCACG
R:
TGACAATGTTGCCCTGTTCGT
Band lengths:
149-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]