GgaEX1065958 @ galGal4
Exon Skipping
Gene
ENSGALG00000003135 | chAnk3
Description
ankyrin 3, node of Ranvier (ankyrin G) [Source:RefSeq peptide;Acc:NP_001264026]
Coordinates
chr6:8482682-8495523:+
Coord C1 exon
chr6:8482682-8482763
Coord A exon
chr6:8492966-8493562
Coord C2 exon
chr6:8495449-8495523
Length
597 bp
Sequences
Splice sites
3' ss Seq
GAGTGATTCTAAACTTGCAGGTC
3' ss Score
6.07
5' ss Seq
TTGGTGAGC
5' ss Score
7.43
Exon sequences
Seq C1 exon
ACGGAGAAAGCCGACCGGCGTCAGAACTTTGTCTCCCTTGCTTTACGTAAGCGCTACAGCTATCTGACTGAGCCTGGAATGA
Seq A exon
GTCCGGCAGTTGAAACCAAAAAGGACGTATGGACTACAGAAGGTATTCTAAAGCAGACTGATCGCTGCTTTAGCCAGAGTAAACTTGAAGTCATTGAGGAGGAAGGCAAGGTAGGCCCTGAAGAAGACAAGGTGCCTTCAAAGGGTCCCGCTTCTGAAAAGGCCGGAGATAAAAGTGAACAGAAGTCAGGGGCGCAGTTTTTCACTTTGGAAGGCAGACACCCTGACAGGACTGTGTTTCCCGATTCATATTTCAGTTACAAAGTAGATGAAGAATTCGCAACACCTTTCAAAACTGTGGCCACTAAGAGTTTAGATTTTGACCCGTGGTCCAATAACCGAGGTGACGACGAAGTGTTTGAAACTAAATCAAGGGATGATGAGGCTAAGCCATTTGGTCTGGCAGTGGAAGACAGATCTCAAGCCACAACACCCGATACAACTCCAGCCAGAACTCCAACAGATGAGAGTACGCCAACTAGCGAGCCCAACCCCTTCCCATTTCATGAAGGGAAGATGTTTGAGATGACTCGCAGTGGTGCAATTGACATGAGCAAGAGGGATTTTGTTGAAGAAAGACTCCAATTTTTTCAGATTG
Seq C2 exon
GTCCACAAAGTCCATGTGAACGGACAGATATAAGGATGGCAATTGTAGCTGATCACCTTGGACTTAGCTGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003135_MULTIEX3-2/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.357 A=NA C2=0.154
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0053117=Death=PU(19.0=61.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]