GgaALTD1026472-2/2 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000003135 | chAnk3
Description
ankyrin 3, node of Ranvier (ankyrin G) [Source:RefSeq peptide;Acc:NP_001264026]
Coordinates
chr6:8482682-8495523:+
Coord C1 exon
chr6:8482682-8482727
Coord A exon
chr6:8482728-8482763
Coord C2 exon
chr6:8495449-8495523
Length
36 bp
Sequences
Splice sites
5' ss Seq
TGAGTGAGT
5' ss Score
6.51
3' ss Seq
CAAGAAATTGTAAATCGCAGGTC
3' ss Score
2.8
Exon sequences
Seq C1 exon
ACGGAGAAAGCCGACCGGCGTCAGAACTTTGTCTCCCTTGCTTTAC
Seq A exon
GTAAGCGCTACAGCTATCTGACTGAGCCTGGAATGA
Seq C2 exon
GTCCACAAAGTCCATGTGAACGGACAGATATAAGGATGGCAATTGTAGCTGATCACCTTGGACTTAGCTGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003135-68-60,69-60-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.357 A=NA C2=0.154
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0053117=Death=PU(19.0=61.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCGTCAGAACTTTGTCTCCC
R:
TGTCCAGCTAAGTCCAAGGTGA
Band lengths:
104-140
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]