MmuALTD0001301-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000069601 | Ank3
Description
ankyrin 3, epithelial [Source:MGI Symbol;Acc:MGI:88026]
Coordinates
chr10:69982124-69994446:+
Coord C1 exon
chr10:69982124-69982161
Coord A exon
chr10:69982162-69982197
Coord C2 exon
chr10:69994372-69994446
Length
36 bp
Sequences
Splice sites
5' ss Seq
TGAGTGAGT
5' ss Score
6.51
3' ss Seq
TGAGAAATTGTAAATCGTAGGTC
3' ss Score
3.2
Exon sequences
Seq C1 exon
GGCAGACAGACGCCAGAGCTTTGCCTCCCTAGCTTTAC
Seq A exon
GTAAGCGCTACAGCTACTTGACTGAACCCAGCATGA
Seq C2 exon
GTCCGCAGAGTCCTTGTGAGCGGACGGATATCAGGATGGCGATAGTAGCCGATCACCTGGGACTTAGTTGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000069601-85-114,86-114-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.099 A=NA C2=0.103
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0053117=Death=PU(19.0=61.5)
Other Inclusion Isoforms:
ENSMUSP00000045834, ENSMUSP00000061698, ENSMUSP00000090087, ENSMUSP00000090088, ENSMUSP00000090089, ENSMUSP00000138092, ENSMUSP00000138285, ENSMUSP00000138326, ENSMUSP00000138337, ENSMUSP00000138347, ENSMUSP00000138356, ENSMUSP00000138481, ENSMUSP00000138531, ENSMUSP00000138623, ENSMUSP00000138686, ENSMUSP00000139496, ENSMUSP00000151906
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGACAGACGCCAGAGCTT
R:
CTGTCCAACTAAGTCCCAGGTG
Band lengths:
112-148
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types