MmuEX1003811 @ mm10
Exon Skipping
Gene
ENSMUSG00000069601 | Ank3
Description
ankyrin 3, epithelial [Source:MGI Symbol;Acc:MGI:88026]
Coordinates
chr10:69986083-69994446:+
Coord C1 exon
chr10:69986083-69988632
Coord A exon
chr10:69993256-69993762
Coord C2 exon
chr10:69994372-69994446
Length
507 bp
Sequences
Splice sites
3' ss Seq
TCCTACTTCTTCATGTTTAGATG
3' ss Score
8.24
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
Exon sequences
Seq C1 exon
CCATGTGATCAGGAGCTATGAGCCCTCTTCTGGAGAGATCCCCCAGTCCCAGCCAGAGGACCCCGTGTCTCCCAAGCCTTCCCCTACTTTTATGGAGTTGGAACCAAAACCCACCACCTCTAGCATCAAGGAAAAAGTAAAAGCATTTCAGATGAAAGCCAGTAGTGAGGAAGAGGACCACAGTCGGGTTCTAAGCAAAGGCATGCGTGTCAAAGAAGAGACTCACATCACCACGACCACCAGGATGGTGTATCACTCCCCTCCTGGTGGCGAGTGCGCCTCCGAAAGGATTGAGGAGACCATGTCAGTCCATGACATCATGAAGGCCTTTCAGTCCGGGCGAGACCCTTCCAAAGAGCTGGCAGGGCTGTTTGAACACAAGTCGGCCATGTCTCCAGATGTTGCCAAGTCTGCTGCTGAGACCTCAGCCCAGCACGCAGAGAAGGACAGCCAAATGAAACCCAAACTGGAGCGCATTATAGAAGTGCACATCGAAAAAG
Seq A exon
ATGCCAAGTCCCGAATTCCCGTCAAAAACACACACAGGGAGAACCTAGTTTCAGTCAGAAAAGCATGCGCCACACAAAAGCGAGGGCAGCCAGAGAGAGGCAAGGCCAAACAGCCTCCATCCAAGTTGCCAGTAAAGGTAAGATCCACCCGTGTCACCGTCACCACCACCAACACCTCCACCACCACTACCACCACCACCACCACCACTACCACCACTACCGTTAAAGTTACAGAAAGTCAGCTTAAGGAGGTATGTAAACATCCCATTGAATATTTTAAGGGAATTAGTGGCGAGACCCTAAAACTTGTGGACCGCCTCACTGAAGAAGACAAAAAGATGCAATCGGAGTTGTCTGATGAGGAAGAAAGTACCTCAAGGAACACGTCGTTGTCCGAGACTTCCCGGGGCGGCCAGCCTTCAGTTACCACGAAGTCTGCTAGAAATAAGAAAACAGAGGCACCGCCCTTAAAATCAAAGAGAGGAAAGGCCGGCAGTAGGAGGACTG
Seq C2 exon
GTCCGCAGAGTCCTTGTGAGCGGACGGATATCAGGATGGCGATAGTAGCCGATCACCTGGGACTTAGTTGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000069601_MULTIEX3-4/4=3-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.587 A=0.801 C2=0.103
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0053117=Death=PU(19.0=61.5)
Main Inclusion Isoform:
ENSMUST00000182992fB5785
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCGGGTTCTAAGCAAAGGCA
R:
ATATCCGTCCGCTCACAAGGA
Band lengths:
349-856
Functional annotations
There are 1 annotated functions for this event
PMID: 9312002
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: . ELM ID: ELMI001681; ELM sequence: FPPPP; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types