MmuALTD0001301-2/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000069601 | Ank3
Description
ankyrin 3, epithelial [Source:MGI Symbol;Acc:MGI:88026]
Coordinates
chr10:69444864-69457194:+
Coord C1 exon
chr10:69444864-69444909
Coord A exon
chr10:69444910-69444945
Coord C2 exon
chr10:69457120-69457194
Length
36 bp
Sequences
Splice sites
5' ss Seq
TGAGTGAGT
5' ss Score
6.51
3' ss Seq
TGAGAAATTGTAAATCGTAGGTC
3' ss Score
3.2
Exon sequences
Seq C1 exon
GCTGAGAAGGCAGACAGACGCCAGAGCTTTGCCTCCCTAGCTTTAC
Seq A exon
GTAAGCGCTACAGCTACTTGACTGAACCCAGCATGA
Seq C2 exon
GTCCGCAGAGTCCTTGTGAGCGGACGGATATCAGGATGGCGATAGTAGCCGATCACCTGGGACTTAGTTGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000069601-44-47,45-47-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.083 A=NA C2=0.092
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0053117=Death=PU(19.0=61.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGAAGGCAGACAGACGC
R:
CTAAGTCCCAGGTGATCGGCT
Band lengths:
112-148
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: