RnoALTD0002695-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000053288 | Ank3
Description
ankyrin 3 [Source:RGD Symbol;Acc:620157]
Coordinates
chr20:20431563-20444263:+
Coord C1 exon
chr20:20431563-20431608
Coord A exon
chr20:20431609-20431644
Coord C2 exon
chr20:20444189-20444263
Length
36 bp
Sequences
Splice sites
5' ss Seq
TGAGTGAGT
5' ss Score
6.51
3' ss Seq
TGAGAAATTGTAAATCGTAGGTC
3' ss Score
3.2
Exon sequences
Seq C1 exon
GCTGAGAAGGCAGACAGACGCCAGAGCTTCACATCCCTAGCCTTAC
Seq A exon
GTAAGCGCTACAGCTACTTGACTGAGCCCAGCATGA
Seq C2 exon
GTCCACAGAGTCCTTGTGAGCGGACGGATATCAGGATGGCAATAGTAGCCGATCACCTGGGACTTAGTTGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053288-72-82,73-82-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.110 A=NA C2=0.077
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0053117=Death=PU(19.0=61.5)
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGAAGGCAGACAGACGC
R:
CTAAGTCCCAGGTGATCGGCT
Band lengths:
112-148
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]