RnoALTA0003457-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000053288 | Ank3
Description
ankyrin 3 [Source:RGD Symbol;Acc:620157]
Coordinates
chr20:20431563-20436062:+
Coord C1 exon
chr20:20431563-20431644
Coord A exon
chr20:20435695-20435700
Coord C2 exon
chr20:20435701-20436062
Length
6 bp
Sequences
Splice sites
5' ss Seq
TGAGTGAGT
5' ss Score
6.51
3' ss Seq
TTTTCATTTTAAAATTTAAGAAA
3' ss Score
4.79
Exon sequences
Seq C1 exon
GCTGAGAAGGCAGACAGACGCCAGAGCTTCACATCCCTAGCCTTACGTAAGCGCTACAGCTACTTGACTGAGCCCAGCATGA
Seq A exon
AAACAG
Seq C2 exon
TTGAACGGAGTTCAGGAACAGCAAGATCCCTTCCCACTACTTATTCACACAAGCCATTCTTTTCTACAAGACCATACCAGTCCTGGACTACGACTCCACTCACAGTGCCCGGGCCGGCCAAATCAGGCTCCTTATCCAGCTCCCCCTCTAACACGCCGTCAGCGTCTCCGTTAAAATCCATATGGTCTGTTTCAACGCCTTCTCCGATCAAATCCACGCTAGGCGCCTCAACTACGTCATCAGTCAAATCCATTAGTGATGTGGCGTCTCCTATTAGATCTTTCCGGACAATTTCTTCGCCAATAAGAACGGTGCAAGATCCCTTCCCACTACTTATTCACACAAGCCATTCTTTTCTACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053288-73-76,73-75-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.126 A=NA C2=0.328
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGACGCCAGAGCTTCACATC
R:
AGTGGGAAGGGATCTTGCTGT
Band lengths:
106-112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]