HsaALTA1035289-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000151150 | ANK3
Description
ankyrin 3 [Source:HGNC Symbol;Acc:HGNC:494]
Coordinates
chr10:60073872-60080618:-
Coord C1 exon
chr10:60080537-60080618
Coord A exon
chr10:60076449-60076454
Coord C2 exon
chr10:60073872-60076448
Length
6 bp
Sequences
Splice sites
5' ss Seq
TGAGTGAGT
5' ss Score
6.51
3' ss Seq
ATTTCATTTTAAAATTTAAGAAA
3' ss Score
4.01
Exon sequences
Seq C1 exon
ATTGAGAAAACAGATAGACGACAGAGCTTCGCATCCTTAGCTTTACGTAAGCGCTACAGCTACTTGACTGAGCCTGGAATGA
Seq A exon
AAACAG
Seq C2 exon
TTGAACGGAGTACAGGAGCAACAAGATCCCTCCCCACCACTTACTCATACAAGCCATTCTTTTCTACAAGACCATACCAGTCCTGGACAACAGCTCCGATTACAGTGCCTGGGCCAGCCAAGTCAGGCTTCACTTCCTTATCAAGTTCTTCCTCTAATACGCCATCAGCTTCTCCGTTAAAATCAATATGGTCTGTTTCGACACCTTCTCCAATCAAATCCACATTAGGCGCGTCAACTACATCTTCAGTTAAATCCATTAGTGACGTGGCATCTCCAATTAGATCCTTTCGGACAATGTCTTCGCCGATAAAAACTGTGGTGTCACAATCTCCATACAATATCCAAGTTTCCTCTGGTACCCTGGCTAGAGCTCCAGCAGTCACGGAAGCTACGCCCTTAAAAGGGCTGGCATCCAATTCTACGTTTTCCTCTCGAACCTCTCCAGTGACTACAGCAGGGTCTCTTTTGGAGAGGTCATCAATTACTATGACACCCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000151150-116-108,116-107-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.196 A=NA C2=0.678
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAGCTTCGCATCCTTAGC
R:
GTAAGTGGTGGGGAGGGATCT
Band lengths:
106-112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains