GgaALTA1036480-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000003135 | chAnk3
Description
ankyrin 3, node of Ranvier (ankyrin G) [Source:RefSeq peptide;Acc:NP_001264026]
Coordinates
chr6:8482682-8489596:+
Coord C1 exon
chr6:8482682-8482763
Coord A exon
chr6:8487152-8487157
Coord C2 exon
chr6:8487158-8489596
Length
6 bp
Sequences
Splice sites
5' ss Seq
TGAGTGAGT
5' ss Score
6.51
3' ss Seq
TTTTAATTTAACAATTTAAGAAA
3' ss Score
3.46
Exon sequences
Seq C1 exon
ACGGAGAAAGCCGACCGGCGTCAGAACTTTGTCTCCCTTGCTTTACGTAAGCGCTACAGCTATCTGACTGAGCCTGGAATGA
Seq A exon
AAACAG
Seq C2 exon
TTGAACGGAGTGCAGGAGCAACAAGATCCCTACCTGCTACTTACTCATACAAGCCATTCTTTTCAACACGGCCATATCAGTCATGGACAACAGCTCCAATTACAGTGCCTGGGCAAACCAAATCAGGCTTCACTTCCTTATCAAGCTCTTCCTCTAACACTCCTACAGCTTCCCCATTAAAATCAATATGGTCTGTTTCTTCTACTTCTCCAATCAAATCCACATTAGGAGCTTCTACCACATCATCAGTTAAATCTGTTAGTGATGTAGCATCTCCGATTAGATCATTTCGGACAATCTCCTCACCAATAAAAACTGTGGTTTCGCAGCCTCCATACAATATGCAGGTTACTTCAGGTTCTTTCGTCAGAGCTCCCGCAGTAACAGAAGCTGCTAGCCTGAAAGGGCTGGCATCCACTACCACATTCCCCTCTCGGACATCTCCTGTGACTACAGCAGGGTCTCTCTTGGAGAGATCATCCATAACCATGACGCCTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003135-69-58,69-57-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.357 A=NA C2=0.447
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTATCTGACTGAGCCTGGA
R:
GGCCGTGTTGAAAAGAATGGC
Band lengths:
98-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]