BtaALTA0002676-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000019052 | ANK3
Description
Bos taurus ankyrin 3, node of Ranvier (ankyrin G) (ANK3), mRNA. [Source:RefSeq mRNA;Acc:NM_001105620]
Coordinates
chr28:15871913-15876878:-
Coord C1 exon
chr28:15876797-15876878
Coord A exon
chr28:15872508-15872513
Coord C2 exon
chr28:15871913-15872507
Length
6 bp
Sequences
Splice sites
5' ss Seq
TGAGTGAGT
5' ss Score
6.51
3' ss Seq
ATTTCATTTTAAAATTTAAGAAA
3' ss Score
4.01
Exon sequences
Seq C1 exon
ACCGAGAAAACGGATAGACGACAGAGTTTTGCATCGTTAGCTTTACGTAAGCGCTACAGCTACTTGACTGAGCCTGGAATGA
Seq A exon
AAACAG
Seq C2 exon
TTGAACGGAGTGCAGGAGCAACAAGATCCCTCCCCACCACTTACTCATACAAGCCATTCTTTTCTACAAGACCCTACCAGTCCTGGACCACAGCTCCGATGACAGTGCCCGGGCCGGCCAAGTCAGGCTTCACTTCCTTGTCAAGTTCTTCCTCTAATACGCCATCAGCTTCCCCATTAAAATCAATATGGTCTGTTTCGACTCCTTCGCCAATCAAATCCACATTAGGCGCATCAACTACATCTTCGGTTAAATCCATTAGTGACGTGGCATCTCCGATTAGATCCTTTCGGACAATTTCTTCACCAATAAAAACAGTGGTGTCACAGTCTCCATACAATATCCAGGTTTCCTCTGGCACCCTGGTTAGAGCTCCCACAGTCACAGAGGCCTCACCTTTAAAGGGGCTGGCATCCACTTCTACATTTTCCTCTCGAACCTCCCCAGTGACTACCGCAGGATCTCTTTTGGAGAGGTCGTCAATTACTATGACACCCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019052-47-54,47-53-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.121 A=NA C2=0.509
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACGACAGAGTTTTGCATCGT
R:
GAGGGATCTTGTTGCTCCTGC
Band lengths:
99-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development