MmuALTA1041326-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000069601 | Ank3
Description
ankyrin 3, epithelial [Source:MGI Symbol;Acc:MGI:88026]
Coordinates
chr10:69982116-69986110:+
Coord C1 exon
chr10:69982116-69982197
Coord A exon
chr10:69986083-69986088
Coord C2 exon
chr10:69986089-69986110
Length
6 bp
Sequences
Splice sites
5' ss Seq
TGAGTGAGT
5' ss Score
6.51
3' ss Seq
TTTCATTTTAAAAATTTAAGAAA
3' ss Score
3.12
Exon sequences
Seq C1 exon
GCTGAGAAGGCAGACAGACGCCAGAGCTTTGCCTCCCTAGCTTTACGTAAGCGCTACAGCTACTTGACTGAACCCAGCATGA
Seq A exon
AAACAG
Seq C2 exon
TTGAACGGAGTTCAGGAACAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000069601-86-106,86-105-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.113 A=NA C2=0.700
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGACAGACGCCAGAGCTTTG
R:
GCTGTTCCTGAACTCCGTTC
Band lengths:
94-100
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types