DreALTA0004636-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000077582 | ank3b
Description
ankyrin 3b [Source:ZFIN;Acc:ZDB-GENE-060621-2]
Coordinates
chr12:7629870-7631399:-
Coord C1 exon
chr12:7631318-7631399
Coord A exon
chr12:7630239-7630244
Coord C2 exon
chr12:7629870-7630238
Length
6 bp
Sequences
Splice sites
5' ss Seq
CGAGTGAGT
5' ss Score
8.49
3' ss Seq
TTTCATTTGTCTGTTTAAAGAAA
3' ss Score
6.39
Exon sequences
Seq C1 exon
ACTGAAAAGCCAGAACGACGTCATACCTTTGCATCTCTAGCCTTACGTAAGCGCTACAGCTATCTGACCGAGCCTGGAACGA
Seq A exon
AAACAG
Seq C2 exon
TTGAACGAAGTACAACAAGAACACTGCCTGCTGGTTACACTCACAAGCCTGTCTTTTCAACAAGATCTTACCAGGCATGGTCGACTGCTCCTATTACCGTCCCTGGGCAAACAAAATGTGGACTGGGTTCCCTCTCCAGTTCACCTTCCAACACGCCATCTGCTTCGCCACTAAAGTCTGTATGGTCCATTTCCTCTGCCTCTCCAGTCAAGTCCACCCTAGGAACATCAAATGCTTCTCCTGCAAAATCAATTAGCGACGTTGCATCACCCATTAGAACATACAGATCAATGTCATCACCCATAAAGACTGTGGTTCAACAACCCCAAAATCAAGTTCCAATATCTTCCAGTCTCCTATCTTCGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077582-54-48,54-47-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.362 A=NA C2=0.749
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCAGAACGACGTCATACCT
R:
AGCAGGCAGTGTTCTTGTTGT
Band lengths:
107-113
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]