RnoINT0017422 @ rn6
Intron Retention
Gene
ENSRNOG00000053288 | Ank3
Description
ankyrin 3 [Source:RGD Symbol;Acc:620157]
Coordinates
chr20:20435695-20438457:+
Coord C1 exon
chr20:20435695-20436072
Coord A exon
chr20:20436073-20436300
Coord C2 exon
chr20:20436301-20438457
Length
228 bp
Sequences
Splice sites
5' ss Seq
CCAGTCCTG
5' ss Score
-19.47
3' ss Seq
ACAATTTCTTCGCCAATAAGAAC
3' ss Score
0.87
Exon sequences
Seq C1 exon
AAACAGTTGAACGGAGTTCAGGAACAGCAAGATCCCTTCCCACTACTTATTCACACAAGCCATTCTTTTCTACAAGACCATACCAGTCCTGGACTACGACTCCACTCACAGTGCCCGGGCCGGCCAAATCAGGCTCCTTATCCAGCTCCCCCTCTAACACGCCGTCAGCGTCTCCGTTAAAATCCATATGGTCTGTTTCAACGCCTTCTCCGATCAAATCCACGCTAGGCGCCTCAACTACGTCATCAGTCAAATCCATTAGTGATGTGGCGTCTCCTATTAGATCTTTCCGGACAATTTCTTCGCCAATAAGAACGGTGCAAGATCCCTTCCCACTACTTATTCACACAAGCCATTCTTTTCTACAAGACCATACCA
Seq A exon
GTCCTGGACTACGACTCCACTCACAGTGCCCGGGCCGGCCAAATCAGGCTCCTTATCCAGCTCCCCCTCTAACACGCCGTCAGCGTCTCCGTTAAAATCCATATGGTCTGTTTCAACGCCTTCTCCGATCAAATCCACGCTAGGCGCCTCAACTACGTCATCAGTCAAATCCATTAGTGATGTGGCGTCTCCTATTAGATCTTTCCGGACAATTTCTTCGCCAATAAG
Seq C2 exon
AACGGTGCCTCTGGTACCCTATAAAGGGGCTGGCTCCCAACTCAACTTTGTCCTCTCGAACTTCTCCTGTGACGACCGCAGGGTCTCTGTTGGAGAGGTCGTCCATCACCATGACACCCCCTGCCTCCCCCAAAGCCAACATCACCATGTATTCCTCCAGCTTGCCATTTAAGTCCATTATCACGTCAGCGGCACCGCTGATCTCCTCCCCTTTAAAGTCAGTGGTGTCTCCGACCAAGTCTGCAGCTAAAGCTGCGATGGCATCGACTCTCTCCTCCCCCTTAAAGCAGATGTCTGGACATGCAGAAGTAGCGCTAGTCAATGGGTCTGTTTCTCCTCTGAAGTATCCTTCCTCTTCCGCTTTAATTAACGGATGCAAAGCCACTGCCACATTACAGGACAAAATTTCTACAGCCACAAATGCTGTGAGCTCGGTGGTGAGCGCGGCCCCTGACACGGTGGAGAAAGCGCTCTCCACCACAACAGCCATGCCCTTTTCCCCACTCAGGTCTTACGTTTCCGCTGCAGCGCCCTCTGCTTTTCAGTCCCTTAGAGCTCCCTCTGCCAGTGCACTCTACACCTCCCTCGGGCCTTCAGTAGCTGTTACTACCTCATCCGTAACTTCATCGATAATCACAGTGCCAGTATACTCGGTAGTCAATGTTTTGCCAGAACCAGCATTGAAGAAACTTCCAGACTCTAACTCGCTCACAAAATCGGCAGCGGCTTTGCTGTCGCCCATTAAAACATTGACTACGGAGACACGTCCTCAGCCCCATTTCAATCGAACGTCATCTCCCGTCAAGTCCTCTCTGTTCCTGGCATCCTCGGCCCTTAAGCCGTCAGTACCATCTTCTTTATCTTCCAGTCAGGAGATCTTAAAAGATGTGGCCGAGATGAAGGAGGACCTCATGAGAATGACCGCCATACTGCAGACGGATGTGCCTGAGGAGAAGCCATTCCAGACCGACCTCCCCCGAGAAGGGAGGATAGACGACGAAGAGCCTTTCAAAATCGTTGAGAAAGTGAAGGAAGACTTAGTCAAAGTCAGTGAGATACTCAAAAAGGACGTGTGTGTCGAGAGCAAAGGGCCACCCAAGTCCCCAAAGAGTGACAAAGGACACTCTCCAGAAGATGACTGGACGGAATTTAGTTCTGAGGAAATACGAGAAGCCAGGCAGGCTGCTGCCAGTCACGCCCCATCCCTGCCCGAGAGAGTACATGGAAAGGCCAACCTCACCAGAGTCATAGACTACCTGACCAATGACATCGGGAGCAGTTCACTGACCAACTTAAAGTACAAGTTTGAAGAGGCTAAGAAGGAAGGAGAGGAGAGACAGAAGAGAATTTTAAAGCCAGCCATGGCCTTGCAGGAGCATAAACTCAAAATGCCGCCAGCCTCCATGAGACCTTCCACCTCCGAGAAGGAACTGTGCAAGATGGCGGACTCCTTTTTTGGAACAGATGCCATCCTAGAGTCTCCCGATGACTTTTCTCAACATGACCAAGACAAAAGTCCCTTGTCCGACAGTGGCTTTGAAACCCGAAGTGAGAAAACACCTTCAGCCCCCCAAAGTGCCGAGAGCACCGGCCCTAAGCCACTATTTCATGAAGTCCCCATCCCCCCTGTCATCACAGAGACGAGAACTGAAGTAGTCCACGTGATCAGGAGCTACGAGCCCTCTACTGGGGAGATCCCCCAGTCCCAGCCAGAGGACCCCGTGTCTCCCAAACCTCCCCCTACATTTATGGAGTTGGAACCAAAGCCCACCGCCCCTAGCATTAAGGAAAAAGTGAAAGCATTCCAAATGAAAGCCAGTAGCGAGGAAGAGGACCACAGTCGGGTTTTAAGCAAAGGCATGCGTGTCAAAGAAGAGACTCACATCACCACAACCACGAGGATGGTGTATCACTCCCCGCCTGGCAGTGAGTGTGCCTCCGAGAGGATTGAGGAGACCATGTCAGTCCATGACATTATGAAGGCTTTTCAGTCCGGGCGAGACCCTTCCAAAGAGCTGGCGGGGCTGTTTGAACACAAGTCGGCCATGTCTCCGGATGTTGCCAAGTCTGCTGCTGAGACCTCGGCCCAGCACGCAGAGAAGGACAACCAAATGAAACCCAAACTGGAGCGTATTATAGAGGTCCACATCGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053288:ENSRNOT00000077620:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.321 A=NA C2=0.556
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGGCTCCTTATCCAGCTCC
R:
AAAGTTGAGTTGGGAGCCAGC
Band lengths:
299-527
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]