HsaALTD1027273-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000151150 | ANK3
Description
ankyrin 3 [Source:HGNC Symbol;Acc:HGNC:494]
Coordinates
chr10:60067935-60080618:-
Coord C1 exon
chr10:60080573-60080618
Coord A exon
chr10:60080537-60080572
Coord C2 exon
chr10:60067935-60068009
Length
36 bp
Sequences
Splice sites
5' ss Seq
TGAGTGAGT
5' ss Score
6.51
3' ss Seq
TAAGAAATTGTAAATCGTAGGTC
3' ss Score
3.04
Exon sequences
Seq C1 exon
ATTGAGAAAACAGATAGACGACAGAGCTTCGCATCCTTAGCTTTAC
Seq A exon
GTAAGCGCTACAGCTACTTGACTGAGCCTGGAATGA
Seq C2 exon
GTCCACAGAGTCCATGTGAACGGACAGATATCAGGATGGCAATAGTAGCCGATCACCTGGGACTTAGTTGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000151150-115-114,116-114-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.193 A=NA C2=0.180
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0053117=Death=PU(19.0=61.5)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGATAGACGACAGAGCTTCG
R:
CTGTCCAACTAAGTCCCAGGTG
Band lengths:
112-148
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains