BtaALTD0002033-2/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000019052 | ANK3
Description
Bos taurus ankyrin 3, node of Ranvier (ankyrin G) (ANK3), mRNA. [Source:RefSeq mRNA;Acc:NM_001105620]
Coordinates
chr28:15864028-15876878:-
Coord C1 exon
chr28:15876833-15876878
Coord A exon
chr28:15876797-15876832
Coord C2 exon
chr28:15864028-15864102
Length
36 bp
Sequences
Splice sites
5' ss Seq
TGAGTGAGT
5' ss Score
6.51
3' ss Seq
TAAGAAATTGTAAATCGTAGGTC
3' ss Score
3.04
Exon sequences
Seq C1 exon
ACCGAGAAAACGGATAGACGACAGAGTTTTGCATCGTTAGCTTTAC
Seq A exon
GTAAGCGCTACAGCTACTTGACTGAGCCTGGAATGA
Seq C2 exon
GTCCACAGAGTCCATGTGAACGGACAGATATCAGGATGGCAATAGTAGCCGATCACCTGGGACTCAGTTGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019052-46-67,47-67-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.121 A=NA C2=0.208
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0053117=Death=PU(19.0=61.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGATAGACGACAGAGTTTTGC
R:
CTGTCCAACTGAGTCCCAGGT
Band lengths:
112-148
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development