RnoINT0017423 @ rn6
Intron Retention
Gene
ENSRNOG00000053288 | Ank3
Description
ankyrin 3 [Source:RGD Symbol;Acc:620157]
Coordinates
chr20:20436301-20444263:+
Coord C1 exon
chr20:20436301-20438457
Coord A exon
chr20:20438458-20444188
Coord C2 exon
chr20:20444189-20444263
Length
5731 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACC
5' ss Score
9.24
3' ss Seq
TGAGAAATTGTAAATCGTAGGTC
3' ss Score
3.2
Exon sequences
Seq C1 exon
AACGGTGCCTCTGGTACCCTATAAAGGGGCTGGCTCCCAACTCAACTTTGTCCTCTCGAACTTCTCCTGTGACGACCGCAGGGTCTCTGTTGGAGAGGTCGTCCATCACCATGACACCCCCTGCCTCCCCCAAAGCCAACATCACCATGTATTCCTCCAGCTTGCCATTTAAGTCCATTATCACGTCAGCGGCACCGCTGATCTCCTCCCCTTTAAAGTCAGTGGTGTCTCCGACCAAGTCTGCAGCTAAAGCTGCGATGGCATCGACTCTCTCCTCCCCCTTAAAGCAGATGTCTGGACATGCAGAAGTAGCGCTAGTCAATGGGTCTGTTTCTCCTCTGAAGTATCCTTCCTCTTCCGCTTTAATTAACGGATGCAAAGCCACTGCCACATTACAGGACAAAATTTCTACAGCCACAAATGCTGTGAGCTCGGTGGTGAGCGCGGCCCCTGACACGGTGGAGAAAGCGCTCTCCACCACAACAGCCATGCCCTTTTCCCCACTCAGGTCTTACGTTTCCGCTGCAGCGCCCTCTGCTTTTCAGTCCCTTAGAGCTCCCTCTGCCAGTGCACTCTACACCTCCCTCGGGCCTTCAGTAGCTGTTACTACCTCATCCGTAACTTCATCGATAATCACAGTGCCAGTATACTCGGTAGTCAATGTTTTGCCAGAACCAGCATTGAAGAAACTTCCAGACTCTAACTCGCTCACAAAATCGGCAGCGGCTTTGCTGTCGCCCATTAAAACATTGACTACGGAGACACGTCCTCAGCCCCATTTCAATCGAACGTCATCTCCCGTCAAGTCCTCTCTGTTCCTGGCATCCTCGGCCCTTAAGCCGTCAGTACCATCTTCTTTATCTTCCAGTCAGGAGATCTTAAAAGATGTGGCCGAGATGAAGGAGGACCTCATGAGAATGACCGCCATACTGCAGACGGATGTGCCTGAGGAGAAGCCATTCCAGACCGACCTCCCCCGAGAAGGGAGGATAGACGACGAAGAGCCTTTCAAAATCGTTGAGAAAGTGAAGGAAGACTTAGTCAAAGTCAGTGAGATACTCAAAAAGGACGTGTGTGTCGAGAGCAAAGGGCCACCCAAGTCCCCAAAGAGTGACAAAGGACACTCTCCAGAAGATGACTGGACGGAATTTAGTTCTGAGGAAATACGAGAAGCCAGGCAGGCTGCTGCCAGTCACGCCCCATCCCTGCCCGAGAGAGTACATGGAAAGGCCAACCTCACCAGAGTCATAGACTACCTGACCAATGACATCGGGAGCAGTTCACTGACCAACTTAAAGTACAAGTTTGAAGAGGCTAAGAAGGAAGGAGAGGAGAGACAGAAGAGAATTTTAAAGCCAGCCATGGCCTTGCAGGAGCATAAACTCAAAATGCCGCCAGCCTCCATGAGACCTTCCACCTCCGAGAAGGAACTGTGCAAGATGGCGGACTCCTTTTTTGGAACAGATGCCATCCTAGAGTCTCCCGATGACTTTTCTCAACATGACCAAGACAAAAGTCCCTTGTCCGACAGTGGCTTTGAAACCCGAAGTGAGAAAACACCTTCAGCCCCCCAAAGTGCCGAGAGCACCGGCCCTAAGCCACTATTTCATGAAGTCCCCATCCCCCCTGTCATCACAGAGACGAGAACTGAAGTAGTCCACGTGATCAGGAGCTACGAGCCCTCTACTGGGGAGATCCCCCAGTCCCAGCCAGAGGACCCCGTGTCTCCCAAACCTCCCCCTACATTTATGGAGTTGGAACCAAAGCCCACCGCCCCTAGCATTAAGGAAAAAGTGAAAGCATTCCAAATGAAAGCCAGTAGCGAGGAAGAGGACCACAGTCGGGTTTTAAGCAAAGGCATGCGTGTCAAAGAAGAGACTCACATCACCACAACCACGAGGATGGTGTATCACTCCCCGCCTGGCAGTGAGTGTGCCTCCGAGAGGATTGAGGAGACCATGTCAGTCCATGACATTATGAAGGCTTTTCAGTCCGGGCGAGACCCTTCCAAAGAGCTGGCGGGGCTGTTTGAACACAAGTCGGCCATGTCTCCGGATGTTGCCAAGTCTGCTGCTGAGACCTCGGCCCAGCACGCAGAGAAGGACAACCAAATGAAACCCAAACTGGAGCGTATTATAGAGGTCCACATCGAAAAAG
Seq A exon
GTAACCAAGCCGAACCCACTGAAGTCATTATTAGAGAGACCAAAAAGCATCCAGAGAAGGAAGTGTCTGTGTATCAGAAAGACTTATTATCCCGGGGAAATATTAACTTAAAAGATTTTCTGCCAGAGAAGCACGATGCTTTCCCTTGCCCCGAGGAGCAGGGCCAGCAAGAAGAGGAGGAGTTTGCCGCAGAAGAGTCCTTGCCTTCTTATCTGGAGTCTTCCAGAGTAAACACTCCAGGGTCCCAAGAAGAAGATAGCCGCCCTAGTTCCGCACAGCTTCTGTCCGATGACTCTTATAAAACCCTGAAGCTTCTGAGTCAGCACTCCGTAGAGTACCATGATGATGAGCTGTCAGACCTAAGAGGGGAGTCTTACAGGTTTGCCGAGAAAATGCTTCTCTCAGAAAAGCTAGATGTTTCTCACTCTGATACCGAGGAATCGGTGACAGACCATGCAGGACCCCCTAGCTCAGAGTTACAGGGGTCTGATAAGCGATCCAGAGAAAAAGTAGCCACTGCCCCCCCAAAAGAGATCCTCTCCAAAATCTATAAAGATGTGTCTGAAAATGGTATAGGGAGAGTGTCTAAAGATGAGCATTTTGAGAAACTGACAGTGTTGCACTACGCGGGCAATGTCAGTGGTCCCAAACATACCATGTGGATGCATTTGTCCGAGGACAGACTAGACAGAGGTAGAGAGAAGCTGATGTATGAAGATAGGGTGGACAGGACCGTGAAGGAGGCAGAAGAGAAGTTGACCGAAGTGTCTCAATTTTTTCGTGACAAAACCGAGAAGCTCAACGACGAACTGCAGTCCCCGGAGAAAAAGCCACGCCCCAAAAACGGCAAGGAATACTCTTCTCAGAGTTCCACCAGCAGTAGCCCCGAGAAAGTGTTAACAGAACTGTTGGCATCCAACGATGAATGGGTTAAGGCCAGGCAGCGCGGTCCAGATGGACAAGGTGTCCCGCAGGCTGAGGACAGGAAGGCACCCAGTGGGTCCAGCAGCCCCGAGAAGAGGGTCCCTTCCCAACAGATTGAGGATGGCCAGCCTCCAGAGGAAGCCAAAAGAACTGTCATTGCTCAGAGCAGGGGACAAGAAGGACCCCAGTCTGGATTTCAGCTCAAACAATCTAAACTCAGTTCCATTAGATTAAAATTTGAACAAGGCGCACGGGCCAAAAGTAAGGATCATGAGGAAAAAAATCTGGACGGGCCATCCCGAATCCCTGTAAAGAAAACTCAAGAAAACAAGCTGCCCACGCACCCAGGTTTTGCTAGAGAAAAACAGCAGAAGGCTGTAGATCCCCCAGAGGAAAAAATGTCGGTGCAAAATGATGTTCTGATTTTCAGACCTGAGCATGGCAAAAGCAGTGAGATGGTTGTGAGCGAATCTGGCTCCAGTGATGGCAAAAGCCACAGAACTGAGATGTTAAGTAAGGCAACGCCTGACTTCTTTCCTGAGCAACAGGTTGAAGACTCAGCCTGTCCCATAACCTCAGATCTAGAGACCAAGGGACCATGGGACCGAAAGGTCTTTAGAACATGGGAAAGTTCTGGGGCCAATAACAATAAGGCTCAGAAAGAACAACTCTCTCACGTGCTCGTTCACGATATCAGAGAGAGTCACGTTGGTCACCCTGACAGTAGCGAGAACGGTGACCCAAAGAATGATTTTATGTATGTGACTGAGAGAGAACACAAAATGTTAACGAACGGCTCTCTCTCAGAAATTAAAGAAATGAGTGTAAAGTCTCCCTCCAAGAAAGTGTTATACAGGGAATACATGGTTAAAGAAGGGGACCTTCCCAGCAGCACTCTCGACCCCCCCAGGAGAAGCGAGAGCTCGGCAGCATCTCACACTCCCATCAGGGTCACAGATGAGAGGAGGATGCTGTCATCAAACATTCCTGATGGGATTTGTGAGCAGACAACATTTCCAAAACAAGACCTGTCCCAAAGAGTGTCCCGGCCAAGTGTGAGCAAAGGGGCAGTTGAGAGCCAGCACTTTAACTCCATAGACGATGAGAAAGTTACCTATTCCGAGATGAGCAAAGTTTCCAAACGTCAGAGTTACGTAGGCCTATGCCCAGCTCTCGATGAAACCGAGACCTCTCCCACCAAATCTCCCGATTCCTTAGAGTTTAGCCCAGGGAAGGACTCTCCCTCTAGCGATGTGTTCGACCACGGTTCAATGGATGGGTTAGAGAAGGCTGAAGGAGGTAAAGAGATCAAAACCTTACCTGTTTATGTCAGCTTCGTGCAAGTGGGGAAACAGTATGAAAAGGAACTCCAACAAGGAGGTGTGAAAAAAATCATCAGTCAGGAGTGTAAGACAGTGCAGGAAGCCAGGGGGACTTTCTATACCGCTAGACAGCAGAAGCAGCCTCCTTCTCCCCAGGGAAGTCCAGAAGACGATACTCTAGAGCAAGTGTCCTTTCTAGACAGCTCTGGGAAGAGCCCTTTGACCCCAGAAACTCCCAGTTCCGAGGAAGTGAGTTATGAGTTCACGTCTAAGACGCCAGACTCACTCATAGCTTTTATACCAGGACAGCCCAGCCCAATTCCTGAGGTTTCTGAGGAGGAGGAGGAGGAGGAAGAGCCCAAAGCAGCCCCACTAAGGCAGGTGCCCGTGGAGAAGGAAACAGATCGTGATGTGAGCAAAGACTCTGTCCAAAGACCCAAATGCAACCGAGTGGCCTATATTGAGTTTCCTCCTCCTCCCCCCCTGGATGCCGACCAGATGGAGTCAGATAAGAAACACGAGTATCTCCCCGACAGGGAGGTTGACATGATGGAAGTCAGCCTTCAGGATGAGTCTGACAAGTACCAGTTGGCCGAGCCAGTCATCCGAGTGCAGCCCCCATCACCAGTCCCTCCTGGTGCCGATGCCAGTGAGTCCAGCGATGACGAGTCCATGTATCAACCGGCCCCAGTTAAAAAATACACCTTCAAGCTGAAGGGAGTGGACGAAGGGCAGAAAGACACAGCAAAATCCAAAACGGCCACCACAAAGGCTTCCAACCAGAAAGAGGTGGAGAGTAACGGGAAAGAGAGTGAGTCTGGCCTTGACTCACCTCAGAATGAAACCGCTCAGAACGGAAACAACGACCAGTCTGTCACCGAGTGTTCCATCGCCACCACGGCCGAGTTTTCTCACGACACGGATGCCACAGAGATAGACTCTCTGGATGGCTATGACCTGCAGGACGAGGATGACGGCCTAACAGAGAGCGACTCTAAACTCCCGAGTCAAACTATAGACACCAAGAAGGATGTCTGGACGGAGGGCATTCTGAAGCCGGCCGACCGCTCTTTCAGTCAGAGCAAACTGGAAGTTATTGAAGAGGAGGGGAAAGTGGGACTGGACGAAGAGAAACCATTACCTTCTAAAAGCTCGTCATCTGACCGAACCCCAGAGAAGGCTGATCCCAAGTCGGGGGCCCAGTTTTTCACCCTGGAAGGCAGACACCCGGACAGATCAGTGTTCCCTGATACTTACTTCAGTTACAAAGTTGATGAAGAATTTGCCACTCCCTTTAAAACAGTGGCGACCAAAGGTCTAGACTTTGACCCTTGGCCCAATAACCGAGGGGACAATGAAGTTTTTGATGGTAAATCCCGGGAAGATGACACTAAGCCATTTGGTCTGGCGGTGGACGACCGCTCTCCGGCAACCACCCCTGACACAACGCCAGCCAGAACACCAACTGACGAAAGTACCCCAACTAGTGAGCCTAACCCCTTCCCATTTCATGAAGGAAAAATGTTTGAGATGACCCGCAGTGGTGCAATTGACATGAGCAAGAGAGATTTTGTGGAAGAGAGGCTCCAATTTTTCCAGATTGGTGAGCATACTCCTGAAGGGAAGTCAGGGGCCCAGGGGGAAGGGGGTACGGTCACTGATACCCCACAGCCAGAGTCAGGGGACACCTCGGTAGACACCAATCTAGAGAGAGATGTAGAGGCACCTACAGTCGACCCCAACCCCAGCATCCCGACCAATGGAGAGTGTCAGGAAGGCACAGCCTGCAATGGCTGCCTGGAGAAGTCGGCAGCTGCCACTAACACCTCAAAAGTTGACCCCAAGTCACGCACACCTATAAAAATGGGAATTTCTGCATCTACCATGACCATGAAGAAAGAAGGCTCTGGAGACACAACAGATAAGACAGAGGCTGTGGTGACCAGTTATCAGGGATTAGAAAATGAAATCGTGAAAGAGATCTCAAGCGCACTCAATAGCCAGGTGGGCATTAGGCCCCAAGAGAAACACGATTTTCAAAAAGATAACTTTAATAACAACAATAATCTGGATGCTTCCGCTATGCAGACAGATAACACCACAAGTCACATAGTTCTGACAGGACGCGCTGCATCCACTTGTACCACAGAGAAAGCTAATCCAGTGAAAGGCTCAGGAAAGAGTCCAGGGACTCAAGGACGCTCCAGCAGAGATTCTCAGAAGGAACCAATAGGGGTTAGGCGGAAATCCAAGCTTCCCGTAAAGGCCACCGCACCAAAAGATGTCTTCCCGCCAAACCATAAGCCAGACAGTAAAGCAGGTAAACTGAGGCAGGTTGGTCAATATGAGAAAAACAAAGCCCTTCCTACTTCTTCATGTATAGATTCCAAGTCTCGAATTCCAGTCAAAAACACACACAGGGAGAACCTAGTTTCAGTCAGAAAAGCATGCGCCACACAAAAGCGAGGGCAGCCAGAGAAAGGCAAGGCCAAACAGCCTCCATCCAAGTTGCCAGTAAAGGTAAGATCCACCTGTGTCACCGTCACCACCACCAACACCTCCACCACCACCACCACCACCACTACCACCACCGTTAAAGTTACAGAAAGTCAGCGTAAGGAGGTATGTAAACATCCCATTGAATATTTTAAGGGAATTAGTGGCGAGACCCTAAAACTTGTGGACCGCCTCACGGAAGAAGACAGAAAGATGCAATCGGAGTTGTCTGATGGGGAGGAAAGTACCTCAAGGAGCACATCGCTGTCCGAGACTTCCCGGGGCGGCCAGCCTTCAGTTACCACGAAGTCTGCTAGAAATAAGAGAACAGAGGCACCGCCCTTAAAATCAAAGAGAGGAAAGAGCTGCAGTAGGAGGACTGGTGAGAATGAAGGCAGACAGGTTTCTTGAGCGCTCTTTGCTCACAACCTGGAGAAACAGCATAGTCCGTAAACACTTTCCAACTCGTAGACCCTAGTGCATGACCTGTCGTGACTTGCTTGTGGAGTGGTTGAACCGTAGCTTCTCATTCTGTCATCGTCATCTGTGTGTGCTGTCCTAGCTCCTCTTCTCTCCCCTCTTAATCCAGCTACACCGTAGAGAACCAGGGAAGCATGCTACACTGGTGTCATTCAAGATGTGAGCGATTTTCTTTTCTAATGTGCTCATGGATATGACTCTGTCAGAGCCAAGGCACAGATTTGTCAGATTCCATTGTAGTGGTTGCCACCAACGCGCGACTCTGTGACCCATTGCAAAGTGGCAAGCTCGCCAGCATGTCTGATCTCATTACATTCCGAGCATCCATGTAATCTGGCATTTGGCCTGATGCGGGTGACAGACGAGTCCTTGCGTAGGTGATTAGGACACATCTAAGTACACAGTGTTAGTAGTGTCAGTCTCTGTAAGATCTGAGTACCGCGAAAAGCAATTTTCCAGTGTCGTGTCTTACTTGGCGCTTGTTTTAATTGAGAAATTGTAAATCGTAG
Seq C2 exon
GTCCACAGAGTCCTTGTGAGCGGACGGATATCAGGATGGCAATAGTAGCCGATCACCTGGGACTTAGTTGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053288:ENSRNOT00000077620:37
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.556 A=NA C2=0.077
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0053117=Death=PU(19.0=61.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]