DreINT0029748 @ danRer10
Intron Retention
Gene
ENSDARG00000061736 | ank3a
Description
ankyrin 3a [Source:ZFIN;Acc:ZDB-GENE-060621-1]
Coordinates
chr17:20697934-20707080:-
Coord C1 exon
chr17:20707002-20707080
Coord A exon
chr17:20698009-20707001
Coord C2 exon
chr17:20697934-20698008
Length
8993 bp
Sequences
Splice sites
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
3' ss Seq
TGTTCTGTATGTCATGTTAGGTC
3' ss Score
7.59
Exon sequences
Seq C1 exon
AATGACAAAGATCGACGACATACCTTTGCCTCATTAGCATTGCGAAAGCGCTACAGCTATCTGGCCGATCCAGCATCCA
Seq A exon
GTGAGTCCCTATTTTTTCTTTATTCTTAAAACATCAGCATGACATAATCACCCATTTAACATCTACCATGTACATAGGCATCTGATACAGGCATCTATGAAGGAACAATAATTTTGTACCACTATTTCCTAAAACAGAATTGCCCATATGAAATGTCTATGTATAGTCATGAATACATTTGTTCGCTTGGTTTTTTGTTGCCTTTTCTGCTTAATTATTTGTCACTCATTGTTTTACATTTCATATGATTTGCTATCACATTGTCCACTCTGTTGTGCTGTTGAATAAATCCATCATGATGTCTTGTATTATTTTTAAAAGAATTTGCTCTCTTGACAGTTCTTAATGATGAAAAACCATGGAACTCAATGTCAGTCTTTTACAACATCATTTTTTTAACGTTTTTTAAATCTAGATGACTTTTACATTAAAATGTAATTGTTAATTTAGATATTAATGCTACATTACAATAAAAGCATATGTTCTTAAAGTGTTTCTCAAATAAATAAGCATTGTTCCGTAAATAGTGATAGTAATTGCCCAACTGTAGTTTCTTCTTTTCTCCCACATGAGCTTAATAATATAATGAACAGTGGTAGGTTTATTTGGCTAAAATTACACAGCCAATTTTGGCTATTCTTATTGACTGAATCAAATTTTATGTTGTAATCTGTACTACTAATACTCTAGTATAATAAGTTTTGTACCAAACACCAGTACTTACAAAAAGATTCAAGAAATGAATCAATGATTAAAATGGTTACATATGACAAATTTTATTATCTTGTTGAATCGCTAAATGCCTCCTTGATTGTAAGTCGTTTTGTGCAAAAGCATCTGCTAAATGATTAAATGTAAATGTATTTATACAAAATATAATTTCAGGCTTTTTGTGTTATTTGGCTGATTCTGTCTTTGTTCGTTTATTTTCATAATTTTGCACCTCCACCCATTTGCCACAGTTTGAGTTATGTATTTCACTTTGTTTTCCAATTTCAAAAGCTTCCACAATTTCAGAATTTTCACTGCTGGTTGTATTTGGATTTATCCCCTGACTAAACCTTTCTCGTCTCTCTTTTCTCTCTTCTTTAACCATTTACGTTTACTTTGTTTATTAATTTAATTATGATAGAAACAGCAGAAAGAGGCCATAACACCCCTCAAAAAACCACGACGCAGCCTTCTGGCTACGCTTACAAGCCTGTCTTTACGACGCGCTCCTACCAGGCCTGGGCGACAAGCTCTCCAGTCAACGTCCCAATCCAGACCAAGTCTGGCTTTGGCTCCCTCTCCAGCTCCTCCTCCAACACCCCCTCAGCCTCCCCACTGAGGTCGGTGTGGTCTGTGAACTCTGCCTCTCCCATTAAATCTATCATTGGAGGTTCACCAGCGTCTTCCATCAAATCTGCCAGTGACGTTGCATCCCCAATTCGATCCTACAGAACAATCTCCTCACCAATAAAGACTGTAGTTCAAGGTGCTCAGTATCCAGTTCAGGCCTCCCCCACCCTTTTGTCCTCTCCAGGGAAGAGTGCCCCTGAACCAGTTTCACATAAAGGCCTCACAAGCCTGTCAGCCAGGACCTCTCCAGTGCCATCTGTTGGGACCTTGCTGGAAAGATCCTCTATAGCTATGACCCCTCCAGCCTCACCCAAGTCTTCACTAAACATGTATAGCTCAAGTTTACCATATAAGTCTGTTGTGACCTCAAACTCTCCAGCTACCTGCTCCCCAATTAAAACTGTCCCAGGCTTCTCCTCTGTCAGAACCAGCACTGATGCCTCAGTCAGAGGATACCTGTCATCCCTCTCCTCACCTCTGAAATCTGGCTCAGCCAATACAGCAGCTGCACTTATCAATGGGACAGTTTCCCCAAACAAATATCGCTCCTCCTCCCCAACAACCCATCTTACCAGCACCTTGCAGGAAAGAATTCAAGCCACAACAAATGCAGCAACAACAAGTGTGAATGCTGCCTTTGAGGAAGTGGAAAAAACATTTAATTCCTGCTCTGCTGGCTACGGCACACTAAAGTCAGTTTCCTCTACTCCCTCATCCTCTTACCAATCCATTCGTTCCTCTGCCTCCAGCTCACTCTATGCCTCCCTCAGATCACCTCCCAACTCCACAACGTCTGTAACTTCCAGCACTATTACGGTTCCTGTCTATTCAGTTATAAATGTCTTACCAGAACACCAGTTTAAAAAGCTTCCAGAAGTCTCCAAATCGACAGCCGCTCTTCTGTCTCCTAGAAAGGTCATGCCCCAAGAAGTAAATGCCCAGAATCAGTCCTCTTTTGCCAGAACTCTGTCTCCTGTCAAGACTCCCCTGCACATGTCCCCAGGAACACTAAAATCTGCTACCTCTTCATCCCCTCTGTCCAACAGTCAGGAGATACTAAAAGATGTGGCTGAAATGAAGGAGGACCTTATTAGAATGTCTGCAATTTTGCAAACTGATACAAATTCAAGCTCCAAAGGTTACCATTCTGACTCTAAGGAACATAAAGTGGAGGATGAGGAGCCTTTCAAGATTGTAGAGAAAGTAAAACAGGACCTGGTCAAAGTCAGTGAAATACTTAGCAAGGATGTTTTAAGAGAGAGTAAGGCAAATATTAAAAACCACAAAAAGGACGTCCTAGAGGATGACATTGAAGATAATCCACAAAATGAATGGAGATGCCCCCCTCGATATGAAACAGTAGCTCCTCAAGTCAAAACAAAAGCTGTATCTGACAGAGATTTTAACCTTGCAAAAGTTGTTGATTATCTAACCAATGACATTGGCACAAGTTCTCTTTCTAAAATAGCAGAGGCTAAACAAAGAACTGAGGAGGCAAGGAGAGATGGAGAGGAAAAACAGAAACGTGTCCTGAAACCTGCAATGGCATTACAGGAGCACAAACTCAAAATGCCTCCAACAAATATGCGTCCCTCACCTTCTGAAAAAGAACTTTCAAAACTAGCTGATGCATTATTTGGCCCTGAAATAGCACTGGACTCTCCTGATGATGTTTCTCATGACCAAGACAAGAGTCCGCTTTCAGATAGTGGATTTGAGACCCGCAGTGAGAGGACACCCTCAGCTCCCCAAAGTGCTGAGGGGATGGGGCCCAAAGGCCTCTTTCAGGAGATTCCCCCTGTCATCACTGAAACACGCACTGAGGTTGTACATGTCATACGTAGCTATGAACCTCCTGAAGATTCTAAGGAGCAAGCACTGGAGGATGCTAGAATGACAAAGCCTCTCTTGCGGTGTGCAGACAGTGAGCCCCGATCACCTGGTGGATCAATCAAAGAAAGAGTTAAAGCTTACCAAGCCAGAGTCAATGCAGAGGAGGATGTGATGGGCAAAGGCATGCGGGTCAAAGAGGAAACTCACATAACAACAACTACAAGAATGGTATACCACAAACCTCCCACTAAAGAGGTGGCATCTGAGAGAATGGAGGAGACCATGTCTGTACGAGATATAATGAAGGCCTTCCAGTCTGGGAAGGACCCATCCAGAGAGTTAACAGGATTGTTTGAACACAAAAGCAACAGCGAAGGAGCAGACCCATCTGCTAGGCCTCTAGACCCAATGCCCAAAGTTGAGCGCATTATTGAGGTTCACATTGAGAAAGGCAACAAAGCTGAACCAACTGAAGTGATTATCAGAGAAACAAAAAATCACCCTGAGAAGGAAATGTATATATATCAAGGCAAAAGTAGCATGAAAGAACTACAAAATGGGATGGGTGTTGGGCAACATAATTGCATAGAGCCTGAAGAATCTCTTCCTTGCTATCTAGATTCTAGAATGCACATGCCTGTCTCTGTGGAGGACGATAAGTCCTTAAAATTACTTGGTCACCAATCATTGGAATACCAAGATGATGAGTCCTCTGAAACAAGGGGAGACTCATACAAGTTTGCAGATAAAATGCTTTTGTCAGAAAAATTTGACTCTTCCCATTCAGACTCAGATGAATCTGTTATTGACCGATCTCGATACTATGGCGAGGGCACACAAGGTGGATCGATTCGAGAATTCATGCTGAAGCCTGATAGGTCACGTAGATCATCAGACGATGATTATGATAAACTCACTTTGTTGCAGTATGCTTCTGATCCTGATAGTCCAAAAAAGTCAATTTGGATGAGAGTTTCTGAGGATGGGCAGAAAAAAGGCAGAGAAAAGCAGAAATATGAGGACAGAGTAGACAGAACTGTCAAAGAGGCAGAAGAAAAACTTACTGAAGTCTCACAATTCTTTCGAGATAAAACTGAAAAACTGAATGATGAGCTTCAGTCCCCCGAGAAGAAGCATCGTAGACAAGATGCAAGGGAGACTCGATCTGGGCCCAGCTCAACTTGCAGTAGCCCAGAGAGATCAGGGCATAGAAATGGGGGGAGTGGAGAAGACTGGAGTAGAGACAGGTTTAGAGATAAGTATGGTTCTCATGATAGAAAATCCGCTAGTTTGCCTAGTAGTCCTGAAAGAAGAGTCTTGCTTCAATACAGTGATGACCCAAAAAGGGGTGACTGTTCATCTGCCAGCAGTGCCAGTGAGTCATCTAAATATTTCCAACCCTCAACATCTAAGGTTAGCTCAGTAAGAATGAAGTTTGAGTCTGAGGCCCAGAAACAAGATAAAGGGCCGCAGTGGGGACAAACTTCTGCATCTCCAGTGAGGAAGTTGCAGGAAAGTAAGCTGCCTGTTTATCAAGTTTTTGCAGGGGGGAATCTCCCTAAATCAGGAGAGTCTTCAGATAATGAAAGAAGCTCCAAAAAAGATAATGAAGGTGGGCACAGTTACAATGTTAGAAAGGCTCAAGCATTTGCCAATAATCAGCAAAGTGACAGACAAGGAAATAGGTCAGATAACTCTTCACTAAAACATCACCAAAATGTTTACAGCAAGGAGCAAATTTCTAATGAAGACAGGAAAATATACAAAACTTGGGAAAATCATGGCAATGGGCAACTGAAAGGTCAAAAGACAAAGCTCACACACACCCTAGTGCATGATAGACAAAAGGATAACTCACAGAATGAGTCTCATTTATTGAGAGAAGGTAATACCACAAAAGAAGAAACAACTAAAAAGATCATTTATACAGAGCTGGTAATCCGAGAAGACCCAAGCAATACTGAAAAATGCAATGGTGCTCTAAAAAAAAACTCGGAATCACAAATTCCTGTTAGGGTGTCATCTAGTTTTATAGATCATCATCAAAGTAGTACTTTAAAGTTAGATTCCTCCATTAAATCTGAGAGAACAGGGTCTCACAAAGCAAGAAATACACAGCACCCCAGTTCAGGTGGTACCAAATCACATAGTGATGTGTCGTCTGTAGTGAACTCAGATTCTAATAGGCAGATTGTTAATATAGTCTGTAATGGAGTGGATGAAAACCAAGTTGAGTACGTTGAAAAAGTGACCCCAGGTGCAGATATAAAACCTCTTCCTGTGTATGTCAGCATTCAAGTAGGTAAACAGTATGAGAAGGAAACCGCTACTGGGCAGCTAAGCACTTACAAAAAAGTAGTAAGCCACGAGAGCAGGACAGTACATGAAACACGTGGAGCCTTTTATTCTGTAAAACAGAAGCAGCCACAATCACCTCAGGGAAGCCCTGAAGATGACACGTTAGAGCAGGTAACATTTATGGACAGTTCAGGGAGAAGTCCTGTAACCCCTGAGACACCTACCTCTGATGAGGTCAGCTATGACCTGAACTCCAGGGCTCCTGAGCCTGTCATTGGTTCCATGGCTGGCATGCCTAGCCCAATACCAGAGGAGTCTGAGGAAGAGGAGCAGCCCAAGACATTCATTTTTAAGGAAAAACCAACAGAAAATGTCAAACCTGCCAATCATTCACCAGAATCATCAAAAAGAAAGCAAGACTCGACTGGAAAAAGGTCAAAAGACAAACGTATAGCTTACATCGAGTTTCCACCACCACCACCATTAGAGACCGAGCATGCTGACCCTGAAAAGAGGGCGTCGTGCCCTTCCTCTGAAGCAGAAACAGAGATGATAGAGGTAAACCTTCAAGAAGAACATGACAGGCATCTCCTTGCAGAACCAGTAATCAGAGTGCAGCCTCCTTCCCCTCTTCCACCTGGAGCTGATAACAGTGATTCCAGTGATGATGAATCTGTTTTTCAGCCTGCCCCACTTAAAAAGTACACCTTCAAAATGGCTGAAGAGTGTGAGAAACGTGTTAAACCTAGGAAACCAGAGAGAAACGGCTCACAACACAAGGAGTCAGGTATCAATGGCATTGTGAAAGGAGATGATGTAGACTGTGAACAAAATGGAAATGATCAATCTATCACTGATTGCTCAATAGCAACAACTGCCGAGTTTTCACATGATACAGATGCCACTGAGATAGATTCTCTTGATGGATATGATCTACAAGATGAGGACGATGGACTGAGTGACCCTAAAACATCCAGCCTGTCGAATGAGGGGAAAACAGGAGATCGTTCCTTCAACCAGAGCAAACTTGAGGTGATTGAAGAGGAGAGCACACCAAATGAGGAAACAGGAGAAAAGGCAAAAACAAAGAGGTCATCTGGTAAAAAGTCAGACAATGGCAAAGAGGATAAAATCTATTCTTTGGAGGGAAGGCACCCTGATAGACAAGGTTCGGCAGAAAATTATTTCAAGTATCAACTAGAGGAGGACATGAACACTACTTTTAAAACTGTGGCTACTAAAGGCTTGGATTTCGATCCATGGTCTGGTAAAGAGGGAGAGGAAGGAGCTTTTGATGCAAAAAATAAAGATGAAGATCCGAAGCCCTGTGCTTTATCAGTGGAAGACAAATCACAAGCTACCACACCGGATACCACTCCAGCAAGAACCCCAACAGATGAGAGCACCCCAACTAGTGAGCCCAACCCTTTCCCCTTCCACGAGGGCAAGATGTTTGAGATGACCCGCAGTGGTGCTATTGACATGAGCAAGAGGGACTTTGTTGAAGAGAGACTTCAGTTTTTCCAGATTGGTGAGCATACATCAGATGGGCAGTCAGGGGACAAGGGGAAAGGGGGCAGGAATGCGGGGATAGTCACCTCTCACTCAAAGGCAGGGGACAGAACTGTAGAGGGGAAGGTAGAGGCAACTGCAGATTTAACACCATCCAGAGGCAGCACAGTGCAGGGCAGTGCTGACTGCCTGGAAGCACCTCCATCCGCTGACACCACCTCATGCACTGTCACAGCCTCCAAGGTTGATCCCAAATTACGCACCCCCATTAAGATGGGCATCGCAGCTTCCATTACTATAAAGAAAGACCCTGGCTCAGCTGAACTGACTGATGTAAAAGCTGAGTCCTCAGACAGTCAGATGCCGGAATACATTAGTTTGGAGTCTCAGTTAGCCGAAAGTCACTTTGATAGCAGATGCACTACCTCTCCCACAATGGGCAGAAAAGATTACCCCTCTGAAAACTACAATAACAACAATAATTTAGAGTCATCCAATGTGCAGGCCAACTACATCCAGTGTGGAAGTGTAGTGTTCAATTTGCAGTCATCTTCTGAACCCACCTTACAGAAAGCTAGTAGAATAGAAGCTCAGTTCTGTAGGGAGTCTGTGGAGAAAGCTTCTCAAAGTCATCAGAATAAAGTAGTCTTTGAGAACAGGCAGCCAAAGTCTAGGCTCCCAGTCAAGGCAGCTGGATTCAGTTTTAACACACACAGTTCAGGAAAGCAAAAACCTAAGCAGGTTGTGAGGCCAGAGGCAAGGAAAGTGGACCCTGTCTCCATAACACCTGAGCACAAGTCTAGAATTCCTGTCAAAGACATGAAAAAAAATTGTGCCGTTAGTTTCCAAGTAGTACCAAGATCAAGTAAGCCTGAGTCAGAGAGATCAGTCAGACCAGTAGTTCCAACTAGGCTTCCTTTCAAAGACAGGTCATCTGGTGCTTCCAGATGTTCAGTTAGTGAGGCAGGTCGAGGCAACTTTAGCGAAGTGTGCAGGCAGTCAATTGAGTTCCTAAAGAATGTTAGTGGAGAAGCAATAAAGGTGGCCGAACGACTCTCAGATGAGGAGAAACAGACACAGGGAGAGCAGTCGCAATCGGAGGAGGACAGCAGCACATCACGAAGCACCTCACTATCGGACCCCTCTCAGTCCCAGCCCTCCCTCTCCGCTGGCTCCTCCCGAGGGGTCACACCCTCGAAGACAAAGGCCAAAAGGGCGGCGGGCAGTGAGAGGAGGAGTAAGCGGACTGGAGGAGGGAAGGAGGGCAGTAAGAACGAAGGGGCTCGCAGGTCGCCCCCCGTCGCGGAGATCAAGCCTAGTTTGTAAAACTTTATTGAAAACTTTACTTGATCCTTAGTTGCATGAGCCGTTGTGACTGATTGGATTGCCTGTGGCGTGAATAATAGCTGTCATTCTTGTCATTCTCTCATCACTGTGCTGTGTGACTGTACCGTTCTGTATCTGTCCCTGTCAGATTTCCCCTTCTCTCTCCCTTACCTTCCAGAGAAAATAATGAGGGGTGGGGCACTGAACAGTCTATCTGTGTTGAGTTGATTATAGGAACATTGTTGATGAGGATTTTAAACCTGCTTCATTGTTTGTGAACTCTGTTAGAAAAAAAATGTGTAGTACTATGTTGTCTGCATGCCTCATCTCAACAAAATGTCTTTTTTTTAAAGATTTTGTTTTAAGTTTTTAATTCCGCGGTATACACACTAGTTATTGCCTGCATAAATTCTGTAAAAAATTTGTTTCACTTGCACAATCAGAGCACCAGCTGTGTAGCTGAAACATTGTAGTTCACTGTCTGCCTGTTCTTCCTTTTCTAGCCAAACACAACACTATTTAAAACATTTCCTAGTTTTTCGTCTCCTGTCCAATGGCCTATTAATGTAGTTTTGTTCATTTTTTTCTTGTTTTGGCCAGAAAAGAAGGAAGTCATCTGGATTTTTAATTTGAAATAATCGTATAACTAGTTTGTAATGATTATGTTCTGTATGTCATGTTAG
Seq C2 exon
GTCCACAGAGTCCATGTGAAAGAACAGACCTACGCATGGCCATTGTGGCTGACCATCTGGGACTGAGCTGGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061736:ENSDART00000149630:37
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.432 A=NA C2=0.238
Domain overlap (PFAM):
C1:
NO
A:
PF0053117=Death=PU(19.0=61.5)
C2:
PF0053117=Death=PU(18.1=57.7)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]