GgaEX1066066 @ galGal4
Exon Skipping
Gene
ENSGALG00000003578 | fn1
Description
fibronectin precursor [Source:RefSeq peptide;Acc:NP_001185641]
Coordinates
chr7:4349291-4350331:-
Coord C1 exon
chr7:4350242-4350331
Coord A exon
chr7:4349586-4349855
Coord C2 exon
chr7:4349291-4349407
Length
270 bp
Sequences
Splice sites
3' ss Seq
CATCTCTTCGAAACACCTAGGGC
3' ss Score
4.12
5' ss Seq
CCGGTAAGC
5' ss Score
8.8
Exon sequences
Seq C1 exon
ATCTGCTCCCTGGTACTGAATATCTGGTGAGAGTCTACAGTGTTGCTGAGCAACATGAGAGTGCGCCTTTGTCTGGAATCCAGAAAACAG
Seq A exon
GGCTCGATTCCCCCACTGGCCTTGACTTCTCGGATATAACTGCTAACTCCTTCACTGTCCACTGGATTGCTCCTCGTGCCACCATTACGGGCTATAAGATTCGGCATCACCCAGAGCACGGTGTTGGCAGGCCCAAGGAGGACCGTGTGCCCCCCTCACGAAACTCCATCACTCTCACCAACCTGCTCCCAGGAACTGAGTATGTGGTCAGCATCATCGCCGTCAACGGCAGGGAGGAGAGCGTGCCCTTGGTTGGCCAGCAGACAACCG
Seq C2 exon
TGTCAGATGTTCCAAGGGACCTGGAAGTCAACCCCACCAGCCCAACCAGCCTCGAGATCTCTTGGGATGCTCCTGCAGTGACAGTCAGATACTACCGGATCACTTATGGTGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003578-'37-38,'37-37,38-38
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.210 A=0.374 C2=0.425
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(26.8=71.0)
A:
PF0004116=fn3=WD(100=89.0)
C2:
PF0004116=fn3=PU(45.1=92.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTGCTCCCTGGTACTGAAT
R:
ACCATAAGTGATCCGGTAGTATCTGA
Band lengths:
200-470
Functional annotations
There are 2 annotated functions for this event
PMID: 1532572
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: affinity chromatography technology, coimmunoprecipitation, polyclonal antibody, western blot. ELM ID: ELMI002209; ELM sequence: NGR; Overlap: FULL
PMID: 1694173
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: affinity chromatography technology, coimmunoprecipitation, polyclonal antibody, western blot. ELM ID: ELMI002209; ELM sequence: NGR; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]