GgaEX1066080 @ galGal4
Exon Skipping
Gene
ENSGALG00000003578 | fn1
Description
fibronectin precursor [Source:RefSeq peptide;Acc:NP_001185641]
Coordinates
chr7:4372974-4375480:-
Coord C1 exon
chr7:4375280-4375480
Coord A exon
chr7:4374637-4374816
Coord C2 exon
chr7:4372974-4373150
Length
180 bp
Sequences
Splice sites
3' ss Seq
ATGCTGTGCCTTGTTAATAGCTG
3' ss Score
5.44
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
GATCTGGCTCTCCCAGCTTCACAAATGTGCAGACTGCGTTGTACCAGCCTCAGCCTCAACAGCCCCAACCTCAGCCACATGGCCACTGTGTAACTGATAATGGAGTGGTGTATTCTTTGGGTATGCAGTGGTTGAAGACACAGGGCAGCCAGCAAATGCTTTGTACTTGTCTGGGCAATGGAGTCAGCTGCCAGGAAATAG
Seq A exon
CTGTGACCCAAACATATGGTGGCAATTCTGATGGAGAAGCCTGTGTTCTGCCTTTCACCTACAACGGGAGGACTTTCTACTCTTGCACTACTGAAGGCCGCACAGATGGGCACCTCTGGTGCAGCACCACTTCCAACTTTGAGCAGGACAGGAGATACTCCTTCTGTACTGAGCAGAATG
Seq C2 exon
TTTTGGTCCAGACACGTGGTGGCAATTCCAACGGTGCTCTGTGCCACTTCCCCTTCCTGTACAACAACCGCAACTATACTGACTGTACTTCTGAGGGACGGAGAGACAACATGAAGTGGTGTGGAACCACTGAGAACTATGATGCTGACCAGAAATTTGGCTTCTGCCCTATGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003578_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.382 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0003913=fn1=WD(100=51.5)
A:
PF0004014=fn2=WD(100=68.9)
C2:
PF0004014=fn2=WD(100=70.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCAGCTTCACAAATGTGCA
R:
TACAGGAAGGGGAAGTGGCAC
Band lengths:
252-432
Functional annotations
There are 2 annotated functions for this event
PMID: 1532572
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: affinity chromatography technology, coimmunoprecipitation, polyclonal antibody, western blot. ELM ID: ELMI002207; ELM sequence: NGR; Overlap: FULL
PMID: 1694173
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: affinity chromatography technology, coimmunoprecipitation, polyclonal antibody, western blot. ELM ID: ELMI002207; ELM sequence: NGR; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]