GgaEX1066293 @ galGal4
Exon Skipping
Gene
NA
Description
NA
Coordinates
chr3:11778179-11790330:+
Coord C1 exon
chr3:11778179-11778296
Coord A exon
chr3:11785013-11785081
Coord C2 exon
chr3:11790213-11790330
Length
69 bp
Sequences
Splice sites
3' ss Seq
ATTTGTTTTTAATGTTTTAGCAA
3' ss Score
7.8
5' ss Seq
AATGTAAGA
5' ss Score
5.55
Exon sequences
Seq C1 exon
GGAGATGCTACGCGATCCAGAAATGAGAAATAAATTAATTTCTAACCCAACTAATTTTAACCACATAGCACATATGGGTCCTGGAGATGGTATACAGATTCTCAAAGACCTTCCAATG
Seq A exon
CAACAGCAAGGGCAGCAGGCCCATGTGATACCGTGTAAGGAAGGTGCTCAGAGGACTGGGGGTGACAAT
Seq C2 exon
AATCTTCGGCCTCAGGAAAGTCGGACCGTATTCAGTGGCTCTGTCAGTATCCCATCGATCACGAAATCCCGCACAGAACCAGGACGATCGATGAGCGCAAGCAGTGGGTTAGCAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009158_MULTIEX1-1/4=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCACATATGGGTCCTGGAGA
R:
TTGCTGCTAACCCACTGCTTG
Band lengths:
170-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]