GgaEX0013464 @ galGal4
Exon Skipping
Gene
ENSGALG00000009158 | CDC42BPA
Description
serine/threonine-protein kinase MRCK alpha [Source:RefSeq peptide;Acc:NP_001186372]
Coordinates
chr3:11778179-11793274:+
Coord C1 exon
chr3:11778179-11778296
Coord A exon
chr3:11790213-11790330
Coord C2 exon
chr3:11793143-11793274
Length
118 bp
Sequences
Splice sites
3' ss Seq
GTTGTGTGTCTGCATTGCAGAAT
3' ss Score
8.67
5' ss Seq
CAAGTAAGC
5' ss Score
7.47
Exon sequences
Seq C1 exon
GGAGATGCTACGCGATCCAGAAATGAGAAATAAATTAATTTCTAACCCAACTAATTTTAACCACATAGCACATATGGGTCCTGGAGATGGTATACAGATTCTCAAAGACCTTCCAATG
Seq A exon
AATCTTCGGCCTCAGGAAAGTCGGACCGTATTCAGTGGCTCTGTCAGTATCCCATCGATCACGAAATCCCGCACAGAACCAGGACGATCGATGAGCGCAAGCAGTGGGTTAGCAGCAA
Seq C2 exon
GACTCCGACTCACCGAGACACTCCACTGCATCGAACAGCTCCAACCTCAGCAGCCCTCCCAGCCCTGTTTCTCCTCACAAGACCAAGAGCCTCTCGCTGGAGAGCTCTGACCACGTGAGTTGGGACTCATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009158_MULTIEX1-3/4=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.908 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGATGCTACGCGATCCAGA
R:
TCCCAACTCACGTGGTCAGAG
Band lengths:
243-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]