BtaEX6068149 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000022777 | CDC42BPA
Description
Bos taurus CDC42 binding protein kinase alpha (DMPK-like) (CDC42BPA), mRNA. [Source:RefSeq mRNA;Acc:NM_001192937]
Coordinates
chr16:30709412-30719963:-
Coord C1 exon
chr16:30719846-30719963
Coord A exon
chr16:30711827-30711944
Coord C2 exon
chr16:30709412-30709569
Length
118 bp
Sequences
Splice sites
3' ss Seq
TCTTTCTCTTTTGATCTTAGAAC
3' ss Score
8.82
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
GGAGATGTTACGAGATCCAGAAATGAGAAATAAGTTAATTTCTAACCCAACTAATTTTAACCACATAGCACATATGGGTCCAGGAGATGGAATACAGATCCTAAAAGACCTGCCCATG
Seq A exon
AACCCTCGGCCTCAGGAAAGTCGGACAGCATTCAGTGGCTCCGTCAGTATTCCGTCTATCACCAAATCCCGCCCTGAACCCGGTCGCTCCATGAGCGCCAGCAGTGGCCTATCAGCAA
Seq C2 exon
GGTCATCTGCACAGAATGGCAGTGCGTTAAAGAGAGAATTCTCTGGAGGCAGCTACAGTGCAAAGCGGCAGCCCATGCCCTCCCCATCGGAGGGCTCGCTGTCTTCGGGAGGCATGGACCAGGGAAGTGACGCCCCAGCACGGGACTATGACGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022777-'49-65,'49-64,52-65=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.965 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGATGTTACGAGATCCAGAA
R:
GTCACTTCCCTGGTCCATGC
Band lengths:
249-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]