MmuEX6029629 @ mm9
Exon Skipping
Gene
ENSMUSG00000026490 | Cdc42bpa
Description
CDC42 binding protein kinase alpha [Source:MGI Symbol;Acc:MGI:2441841]
Coordinates
chr1:182081291-182091828:+
Coord C1 exon
chr1:182081291-182081408
Coord A exon
chr1:182089737-182089854
Coord C2 exon
chr1:182091671-182091828
Length
118 bp
Sequences
Splice sites
3' ss Seq
TCCTCTCCTTTGTGTTTTAGAAC
3' ss Score
11.52
5' ss Seq
CACGTAAGT
5' ss Score
10.16
Exon sequences
Seq C1 exon
GGAGATGCTACGAGATCCAGAAATGAGAAATAAATTAATTTCTAACCCAACTAATTTTAACCACATAGCACACATGGGTCCTGGAGATGGAATACAGATCCTAAAAGACCTGCCCATG
Seq A exon
AACCCACGGCCTCAGGAAAGCCGGACAGTATTCAGTGGCTCCGTCAGTATTCCCTCCATCACCAAGTCCCGCCCTGAGCCAGGCCGCTCCATGAGTGCCAGCAGCGGCCTGTCTGCAC
Seq C2 exon
GGTCGTCAGCCCAGAATGGCAGTGCACTAAAGAGGGAATTCTCTGGAGGAAGCTATAACACAAAGCGACAGCCCATGCCCTCTCCCTCGGAGGGCTCTTTGTCATCAGGAGGCATGGACCAAGGAAGTGACGCCCCTGCGAGGGACTATGATGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026490-'52-55,'52-53,55-55=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.986 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0078623=PBD=WD(100=47.5)
A:
PF0078623=PBD=PD(18.3=27.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGATGCTACGAGATCCAGA
R:
CACTTCCTTGGTCCATGCCTC
Band lengths:
247-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: