RnoEX6045606 @ rn6
Exon Skipping
Gene
ENSRNOG00000002841 | Cdc42bpa
Description
CDC42 binding protein kinase alpha [Source:RGD Symbol;Acc:621406]
Coordinates
chr13:98437251-98446701:+
Coord C1 exon
chr13:98437251-98437368
Coord A exon
chr13:98444758-98444875
Coord C2 exon
chr13:98446544-98446701
Length
118 bp
Sequences
Splice sites
3' ss Seq
GCCTCTCCTTTGTGTTTTAGAAC
3' ss Score
11.21
5' ss Seq
CACGTAAGT
5' ss Score
10.16
Exon sequences
Seq C1 exon
GGAGATGCTACGAGATCCAGAAATGAGAAATAAATTAATTTCTAACCCAACTAATTTTAACCACATAGCACACATGGGTCCTGGAGATGGAATACAGATCCTAAAAGACCTGCCCATG
Seq A exon
AACCCACGGCCTCAGGAAAGCCGGACAGTATTCAGTGGCTCCGTCAGTATTCCCTCCATCACCAAGTCCCGCCCTGAGCCAGGCCGCTCCATGAGTGCCAGCAGTGGCCTGTCTGCAC
Seq C2 exon
GGTCATCAGCCCAGAATGGCAGTGCGCTAAAGAGGGAATTCTCTGGAGGAAGCTACAACACGAAGCGACAGCCCATGCCCTCTCCCTCAGAAGGCTCTTTGTCATCAGGAGGCGTGGACCAAGGAAGTGACGCCCCCGTGAGGGACTATGATGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002841-'63-70,'63-69,67-70=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.975 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF0078623=PBD=PD(21.9=35.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGATGCTACGAGATCCAGA
R:
CGTCACTTCCTTGGTCCACG
Band lengths:
250-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]