GgaEX0013464 @ galGal3
Exon Skipping
Gene
ENSGALG00000009158 | CDC42BPA
Description
NA
Coordinates
chr3:13327716-13340951:+
Coord C1 exon
chr3:13327716-13327833
Coord A exon
chr3:13339750-13339867
Coord C2 exon
chr3:13340794-13340951
Length
118 bp
Sequences
Splice sites
3' ss Seq
GTTGTGTGTCTGCATTGCAGAAT
3' ss Score
8.67
5' ss Seq
CAAGTAAGC
5' ss Score
7.47
Exon sequences
Seq C1 exon
GGAGATGCTACGCGATCCAGAAATGAGAAATAAATTAATTTCTAACCCAACTAATTTTAACCACATAGCACATATGGGTCCTGGAGATGGTATACAGATTCTCAAAGACCTTCCAATG
Seq A exon
AATCTTCGGCCTCAGGAAAGTCGGACCGTATTCAGTGGCTCTGTCAGTATCCCATCGATCACGAAATCCCGCACAGAACCAGGACGATCGATGAGCGCAAGCAGTGGGTTAGCAGCAA
Seq C2 exon
GATCATCTGCACAAAATGGCAGTGCATTGCGGAGGGAATTCTCAGGAGGTAGCTATGGAGCAAAGCGTCAGCCTATGGCATCGCCCTCAGATGGTTCGTTATCCTCTGGTGGCCTGGACCAAGGCAGTGATGCACCAACAAGGGACTATGAGCGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009158-'39-52,'39-51,43-52
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.956 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0078623=PBD=WD(100=47.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTACGCGATCCAGAAATGA
R:
TCCCTTGTTGGTGCATCACTG
Band lengths:
258-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]