GgaEX0013466 @ galGal3
Exon Skipping
Gene
ENSGALG00000009158 | CDC42BPA
Description
NA
Coordinates
chr3:13339750-13343393:+
Coord C1 exon
chr3:13339750-13339867
Coord A exon
chr3:13340794-13340951
Coord C2 exon
chr3:13342680-13343393
Length
158 bp
Sequences
Splice sites
3' ss Seq
AATTCCTCTGCACATTTTAGGAT
3' ss Score
7.68
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
AATCTTCGGCCTCAGGAAAGTCGGACCGTATTCAGTGGCTCTGTCAGTATCCCATCGATCACGAAATCCCGCACAGAACCAGGACGATCGATGAGCGCAAGCAGTGGGTTAGCAGCAA
Seq A exon
GATCATCTGCACAAAATGGCAGTGCATTGCGGAGGGAATTCTCAGGAGGTAGCTATGGAGCAAAGCGTCAGCCTATGGCATCGCCCTCAGATGGTTCGTTATCCTCTGGTGGCCTGGACCAAGGCAGTGATGCACCAACAAGGGACTATGAGCGAGAG
Seq C2 exon
GACTCCGACTCACCGAGACACTCCACTGCATCGAACAGCTCCAACCTCAGCAGCCCTCCCAGCCCTGTTTCTCCTCACAAGACCAAGAGCCTCTCGCTGGAGAGCTCTGACCACGTGAGTTGGGACTCATGAACTGCTTCAGCATTCAGATTTGACACTACAGCAGCTTGCTGTCCCCTTCACTTGCTCCAGTTCACACCTTCACCACCCTAACCCTCCTCATTCCCCACCCAAAAGTCAACTGGGAGTCGGGTAGAGAGGAAGGTAGAAGCTGGTTGTCTGCAGCGCTGCCTCACCCTCCCTTCCCCAGATTTGACAGCAGCGAATGAGCAAAGCTAGGGTGTTGGTAAATATCAGATGCTGTAGATTTGTATTAGTATTGGTTTCATCTTTTGCGATTACAGCTGCTTTCATTTTCAAAGACATGTATTTATCCTACCCTACAATTCCTTCAAAAGTAACTTAAATAGACCAGACCGGTATCAGTAAGAGAAGATGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009158-'43-53,'43-52,44-53
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACCAGGACGATCGATGAGC
R:
GGTGGTGAAGGTGTGAACTGG
Band lengths:
252-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]