MmuEX0010393 @ mm9
Exon Skipping
Gene
ENSMUSG00000026490 | Cdc42bpa
Description
CDC42 binding protein kinase alpha [Source:MGI Symbol;Acc:MGI:2441841]
Coordinates
chr1:182089737-182093287:+
Coord C1 exon
chr1:182089737-182089854
Coord A exon
chr1:182091671-182091828
Coord C2 exon
chr1:182092166-182093287
Length
158 bp
Sequences
Splice sites
3' ss Seq
TCCCAACCATTGTCCTGTAGGGT
3' ss Score
7.77
5' ss Seq
GAGGTGAAT
5' ss Score
5.37
Exon sequences
Seq C1 exon
AACCCACGGCCTCAGGAAAGCCGGACAGTATTCAGTGGCTCCGTCAGTATTCCCTCCATCACCAAGTCCCGCCCTGAGCCAGGCCGCTCCATGAGTGCCAGCAGCGGCCTGTCTGCAC
Seq A exon
GGTCGTCAGCCCAGAATGGCAGTGCACTAAAGAGGGAATTCTCTGGAGGAAGCTATAACACAAAGCGACAGCCCATGCCCTCTCCCTCGGAGGGCTCTTTGTCATCAGGAGGCATGGACCAAGGAAGTGACGCCCCTGCGAGGGACTATGATGGAGAG
Seq C2 exon
GACTCTGATTCTCCAAGGCATTCCACAGCTTCCAACAGCTCTAACCTGAGCAGCCCCCCAAGTCCCATTTCACCCCAAAAGACCAAGAGCCTCTCCCTGGAGAGCACAGACCGCGGGAGCTGGGATCCATGAGCCCAGGACCGGTGACTGCAGGCAGGGACTCTGCACTCCCACTCCGACAACGTGCCTGGCAGCAGCCTTGCCTTCCGCACTGCTGCAATGGGGATTCCTCCGCAGCCAGGCCCGCTTCACCCTCCCCTCAACCCCCAGGTAGCTTCTGTAGACAGACTGCGCAGACGCAGCGCTAAGAGTAGACCGGTTGTGTTCTCACCGTAGCCCTCACGTAGCGCCCAGCAGCCTCCATGAGCGTCAGCCAACTGTTGCCAGGAAGTAAACCCTCACGAATTAAAACAATGCATATTTTACTACAATACAGAGTTTAAATAAATACATAGATGTAGAAGTTAAATACTGAATGTAAATAGTCAAAGAAGCATCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026490-'55-56,'55-55,56-56
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0078623=PBD=PD(18.3=27.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCGTCAGTATTCCCTCCA
R:
GGAGTGGGAGTGCAGAGTCC
Band lengths:
258-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: