RnoEX6045605 @ rn6
Exon Skipping
Gene
ENSRNOG00000002841 | Cdc42bpa
Description
CDC42 binding protein kinase alpha [Source:RGD Symbol;Acc:621406]
Coordinates
chr13:98444758-98447762:+
Coord C1 exon
chr13:98444758-98444875
Coord A exon
chr13:98446544-98446701
Coord C2 exon
chr13:98447048-98447762
Length
158 bp
Sequences
Splice sites
3' ss Seq
TCCCAACCGTTGTCCTATAGGGT
3' ss Score
7.93
5' ss Seq
GAGGTGAAT
5' ss Score
5.37
Exon sequences
Seq C1 exon
AACCCACGGCCTCAGGAAAGCCGGACAGTATTCAGTGGCTCCGTCAGTATTCCCTCCATCACCAAGTCCCGCCCTGAGCCAGGCCGCTCCATGAGTGCCAGCAGTGGCCTGTCTGCAC
Seq A exon
GGTCATCAGCCCAGAATGGCAGTGCGCTAAAGAGGGAATTCTCTGGAGGAAGCTACAACACGAAGCGACAGCCCATGCCCTCTCCCTCAGAAGGCTCTTTGTCATCAGGAGGCGTGGACCAAGGAAGTGACGCCCCCGTGAGGGACTATGATGGAGAG
Seq C2 exon
GACTCTGATTCTCCAAGGCATTCCACAGCTTCCAACAGCTCTAACCTGAGCAGCCCCCCAAGCCCCGTTTCACCCCGAAAGACCAAGAGCCTCTCCTTGGAGAGCACAGACCGTGGGAGCTGGGATCCATGAGCAGGACCAGTGACTCCAGGCAGGGACCCTGCCCTCCCACTCTGACAACGCGCCTGGCAGCAGCATCACCTTCCACACTGCTGCACCGAGGATTCCTTCACAGCCAGGCCCGCTTCACCCTTCCCCCAACCCCCAGGTAGCTTCTGTAGACAGACTGCGCAGACGCAGCGCTAAGAGTAGACCGGTTGTGTTCTCACCGTAGCCCTCACGTAGCGCCCAGCAGCCTCCATGAGCGTCAGCTGACTGTTGCCAGGAAATAAACCCTCATGAATTAAAACAATGCATATTTTACTACAATACAGAGTTTAAATAAATACATAGATGTAGACGTTAAATACTGAATGTAAATAGTCAAAGAAGCATCTCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002841-'67-71,'67-70,69-71=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0078623=PBD=PD(21.9=35.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCAGGAAAGCCGGACAGTA
R:
TCACTGGTCCTGCTCATGGAT
Band lengths:
254-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]